1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtattacattctatgcatctgtgttacacactaaattaccaatgaccttcaccactccttcaatggatcatttccagcatccatctatcagttcaccttttgactttacatctttatgattaaagGTTCCAGCCAAGCATCTTCTTCCGGTGCCAAGACCAGATCCAGAGGTCGTTGCTATGCTAACATCAGGATTGACTGCTTCAATTGCCCTTGAGAAG
species | Oryza sativa |
transcript | LOC_Os09g28570.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTTATGACTTTTGGGG-CTATTCTGAA-TTACTCAG GTTCCAGCCAAGCATCTTCTTCCGGTG-CAAGAGCAGATCCAGAGGTCGTTEST: gi|88405965|gb|CI591360.1|CI591360
genomic: CTTATGATTTTTGGGGCCTATTCTGAATTTACTCAGgtattacatt ... atgattaaagGTTCCAGCCAAGCATCTTCTTCCGGTGCCAAGACCAGATCCAGAGGTCGTT
EST: CAGTCCTGTAGCCCTTATGATTTTTGGGGCCCTATTCTGAATTTACTCAG GTTCCAGCCAAGCATCTTCTTCCGGTGCCAAGACCAGATC-AGAGGTCGTT
genomic: CAGTCCTGTAGCCCTTATGATTTTTGGGGCC-TATTCTGAATTTACTCAGgtattacatt ... atgattaaagGTTCCAGCCAAGCATCTTCTTCCGGTGCCAAGACCAGATCCAGAGGTCGTT
tttccagcatccatctatcagttcaccttttgactttacatctttatgattaaagGTTCCAGCCAAGCATCTTCTTCCGGTGCCAAGACCAGATCCAGAGGTCGTTGCTATGCTAACATCAGGATTGACTGCTTCAATTGCCCTTGAGAAG
ttttgac putative branch site (score: 3)
tctttat putative PPT
atctttatgattaaa TA-rich tract