1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtgagtgcatctgctgtactaatactgagttttcaccctatgtttgctctgtaaaagcacccctaatcttttgggtgttattcagTGAGAATGTTGGTCTTCTTGGATCAACAAGGGTTGGTAGCAGGAGAGTGATACAGATTTCTGCAGGATTCATGATCTTCTTCTCCATGCTAG
species | Oryza sativa |
transcript | LOC_Os09g15170.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ACCTTACTAGATGGTCTATTTGGCACTGGTACTGGATCTACTGTTTCTGT TGAGAATGTTGGTCTTCTTGGATCAACAAGGGTTGGTEST: gi|58652725|gb|CK041405.1|CK041405
genomic: ACCTTACTAGATGGTCTATTTGGCACTGGTACTGGATCTACTGTTTCTGTgtgagtgcat ... tgttattcagTGAGAATGTTGGTCTTCTTGGATCAACAAGGGTTGGT
EST: ACCTTACTAGATGGTCTATTTGGCACTGGTACTGGATCTACTGTTTCTGT TGAGAATGTTGGTCTTCTTGGATCAACAAGGGTTGGTAGCAGGAGAGTGATEST: gi|112785328|gb|EE590478.1|EE590478
genomic: ACCTTACTAGATGGTCTATTTGGCACTGGTACTGGATCTACTGTTTCTGTgtgagtgcat ... tgttattcagTGAGAATGTTGGTCTTCTTGGATCAACAAGGGTTGGTAGCAGGAGAGTGAT
EST: ACCTTACTAGATGGTCTATTTGGCACTGGTACTGGATCTACTGTTTCTGT TGAGAATGTTGGTCTTCTTGGATCAACAAGGGTTGGTAGCAGGAGAGTGAT
genomic: ACCTTACTAGATGGTCTATTTGGCACTGGTACTGGATCTACTGTTTCTGTgtgagtgcat ... tgttattcagTGAGAATGTTGGTCTTCTTGGATCAACAAGGGTTGGTAGCAGGAGAGTGAT
tttcaccctatgtttgctctgtaaaagcacccctaatcttttgggtgttattcagTGAGAATGTTGGTCTTCTTGGATCAACAAGGGTTGGTAGCAGGAGAGTGATACAGATTTCTGCAGGATTCATGATCTTCTTCTCCATGCTAG
ccctaat putative branch site (score: 2)
taatctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgcatctgctgtactaatactgagttttcaccctatgtttgctctgtaaaagcacccctaatcttttgggtgttattcagTGAGAATGTTGGTCTTCTTGGATCAACAAGGGTTGGTAGCAGGAGAGTGATACAGATTTCTGCAGGATTCATGATCTTCTTCTCCATGCTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG