1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...agttctgtccaaattaatacagtgaagtactgcatatatatgcttgttgtaatagcttgtaatttctagtcttgttaacttaacatgtttcattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGCAAGCTATTTCATTGCTGGCCCCTGTCATGGGTGCCGAAATCACTTGTC
species | Oryza sativa |
transcript | LOC_Os09g07510.3 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|58683974|gb|CK072661.1|CK072661
genomic: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACEST: gi|58693179|gb|CK081866.1|CK081866
genomic: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAAC
EST: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|29667131|gb|CB663406.1|CB663406
genomic: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|38476835|gb|CF960968.1|CF960968
genomic: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|29658916|gb|CB655191.1|CB655191
genomic: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|88962171|gb|CI097324.1|CI097324
genomic: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: AGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATATACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|87038212|gb|CI192834.1|CI192834
genomic: AGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|87037905|gb|CI192527.1|CI192527
genomic: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|58598388|gb|CK008916.1|CK008916
genomic: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|87036423|gb|CI191045.1|CI191045
genomic: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|87041468|gb|CI196090.1|CI196090
genomic: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|87017349|gb|CI301385.1|CI301385
genomic: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|33654810|gb|CF277424.1|CF277424
genomic: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCCGCATTAT-TCTACCGCATGACCATCCTEST: gi|29642127|gb|CB647134.1|CB647134
genomic: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAA-CCCGCATTATCTCTACCGCATGACCATCCT
EST: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|29641703|gb|CB646710.1|CB646710
genomic: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|42592112|gb|CK738598.1|CK738598
genomic: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|88250842|gb|CI248693.1|CI248693
genomic: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: CATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|58668351|gb|CK057037.1|CK057037
genomic: CATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: TTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|87041657|gb|CI196279.1|CI196279
genomic: TTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|86899096|gb|CI296244.1|CI296244
genomic: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|86481308|gb|CI123941.1|CI123941
genomic: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|7134620|gb|AU082588.1|AU082588
genomic: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|33656227|gb|CF278841.1|CF278841
genomic: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: AGCTGAGGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|58663458|gb|CK052144.1|CK052144
genomic: AGCTGAGG-AGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|89175570|gb|CI042591.1|CI042591
genomic: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: AGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
genomic: AGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
gttgtaatagcttgtaatttctagtcttgttaacttaacatgtttcattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGCAAGCTATTTCATTGCTGGCCCCTGTCATGGGTGCCGAAATCACTTGTC
tttcattttct CT-rich tract
ttgtaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttctgtccaaattaatacagtgaagtactgcatatatatgcttgttgtaatagcttgtaatttctagtcttgttaacttaacatgtttcattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGCAAGCTATTTCATTGCTGGCCCCTGTCATGGGTGCCGAAATCACTTGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT