1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtccatctctctctctctctctcgctctccctctccctcgctctctgtgacaagttgttctcatatgtactgtatcttctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAGGATTGCTGGAGCTGATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGG
species | Oryza sativa |
transcript | LOC_Os08g42410.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GTTGGCGCTGAAATATG CATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAGEST: gi|86540582|gb|CI180788.1|CI180788
genomic: GTTGGCGCTGAAATATGgtccatctct ... ttctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAG
EST: GTAACCCTTGAAGAAGGATTTCCACAACATGGGGTTGGCGCTGAAATATG CATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAGEST: gi|88961781|gb|CI096947.1|CI096947
genomic: GTAACCCTTGAAGAAGGATTTCCACAACATGGGGTTGGCGCTGAAATATGgtccatctct ... ttctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAG
EST: CGCTGAAATATG CATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAGEST: gi|89191954|gb|CI250895.1|CI250895
genomic: CGCTGAAATATGgtccatctct ... ttctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAG
EST: GTAACCCTTGAAGAAGGATTTCCACAACATGGGGTTGGCGCTGAAATATG CATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAGEST: gi|58608415|gb|CK036448.1|CK036448
genomic: GTAACCCTTGAAGAAGGATTTCCACAACATGGGGTTGGCGCTGAAATATGgtccatctct ... ttctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAG
EST: GTAACCCTTGAAGAAGGATTTCCACAACATGGGGTTGGCGCTGAAATATG CATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAGEST: gi|218478794|gb|FG960305.1|FG960305
genomic: GTAACCCTTGAAGAAGGATTTCCACAACATGGGGTTGGCGCTGAAATATGgtccatctct ... ttctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAG
EST: GTAACCCTTGAAGAAGGATTTCCACAACATGGGGTTGGCGCTGAAATATG CATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAGEST: gi|87020958|gb|CI269675.1|CI269675
genomic: GTAACCCTTGAAGAAGGATTTCCACAACATGGGGTTGGCGCTGAAATATGgtccatctct ... ttctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAG
EST: GTAACCCTTGAAGAAGGATTTCCACAACATGGGGTTGGCGCTGAAATATG CATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAGEST: gi|88251000|gb|CI349230.1|CI349230
genomic: GTAACCCTTGAAGAAGGATTTCCACAACATGGGGTTGGCGCTGAAATATGgtccatctct ... ttctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAG
EST: GCTGAAATATG CATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAGEST: gi|88837903|gb|CI371481.1|CI371481
genomic: GCTGAAATATGgtccatctct ... ttctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAG
EST: ATTTCCACAACATGGGG-TGGCGCTGAAATATG CATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAGEST: gi|38472326|gb|CF956457.1|CF956457
genomic: ATTTCCACAACATGGGGTTGGCGCTGAAATATGgtccatctct ... ttctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAG
EST: GTAACCCTTGAAGAAGGATTTCCACAACATGGGGTTGGCGCTGAAATATG CATGTCTGTTGTAGAGGACAGCTTTGAEST: gi|89168103|gb|CI109307.1|CI109307
genomic: GTAACCCTTGAAGAAGGATTTCCACAACATGGGGTTGGCGCTGAAATATGgtccatctct ... ttctttgcagCATGTCTGTTGTAGAGGACAGCTTTGA
EST: TTGGCGCTGAAATATG CATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAGEST: gi|33824376|gb|CF338005.1|CF338005
genomic: TTGGCGCTGAAATATGgtccatctct ... ttctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAG
EST: TANACCCTTGAAGAAGGATTTCCACAACATGGGGTTGGCGCTGAAATATG CATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAGEST: gi|29614435|gb|CB619448.1|CB619448
genomic: TA-ACCCTTGAAGAAGGATTTCCACAACATGGGGTTGGCGCTGAAATATGgtccatctct ... ttctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAG
EST: GTAACCCTTGAAGAAGGATTTCCACAACATGGGGTTGGCGCTGAAATATG CATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAGEST: gi|88844973|gb|CI022327.1|CI022327
genomic: GTAACCCTTGAAGAAGGATTTCCACAACATGGGGTTGGCGCTGAAATATGgtccatctct ... ttctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAG
EST: GTAACCCTTGAAGAAGGATTTCCACAACATGGGGTTGGCGCTGAAATATG CATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAGEST: gi|89192853|gb|CI050151.1|CI050151
genomic: GTAACCCTTGAAGAAGGATTTCCACAACATGGGGTTGGCGCTGAAATATGgtccatctct ... ttctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAG
EST: GTAACCCTTGAAGAAGGATTTCCACAACATGGGGTTGGCGCTGAAATATG CATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAGEST: gi|86538636|gb|CI178842.1|CI178842
genomic: GTAACCCTTGAAGAAGGATTTCCACAACATGGGGTTGGCGCTGAAATATGgtccatctct ... ttctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAG
EST: GGGTTGGCGCTGAAATATG CATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAGEST: gi|88991256|gb|CI108643.1|CI108643
genomic: GGGTTGGCGCTGAAATATGgtccatctct ... ttctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAG
EST: TTGGCTCTGAAATATG CATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAGEST: gi|42591826|gb|CK738312.1|CK738312
genomic: TTGGCGCTGAAATATGgtccatctct ... ttctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAG
EST: GTAACCCTTGAAGAAGGATTTCCACAACATGGGGTTGGCGCTGAAATATG CATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAGEST: gi|38475005|gb|CF959138.1|CF959138
genomic: GTAACCCTTGAAGAAGGATTTCCACAACATGGGGTTGGCGCTGAAATATGgtccatctct ... ttctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAG
EST: GTAACCCTTGAAGAAGGATTTCCACAACATGGGGTTGGCGCTGAAATATG CATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAGEST: gi|88960452|gb|CI006413.1|CI006413
genomic: GTAACCCTTGAAGAAGGATTTCCACAACATGGGGTTGGCGCTGAAATATGgtccatctct ... ttctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAG
EST: GTAACCCTTGAAGAAGGATTTCCACAACATGGGGTTGGCGCTGAAATATG CATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAGEST: gi|86854408|gb|CI256530.1|CI256530
genomic: GTAACCCTTGAAGAAGGATTTCCACAACATGGGGTTGGCGCTGAAATATGgtccatctct ... ttctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAG
EST: GTAACCCTTGAAGAAGGATTTCCACAACATGGGGTTGGCGCTGAAATATG CATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAGEST: gi|86427084|gb|CI072181.1|CI072181
genomic: GTAACCCTTGAAGAAGGATTTCCACAACATGGGGTTGGCGCTGAAATATGgtccatctct ... ttctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAG
EST: GCTGAAATATG CATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAGEST: gi|86823435|gb|CI256396.1|CI256396
genomic: GCTGAAATATGgtccatctct ... ttctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAG
EST: GTAACCCTTGAAGAAGGATTTCCACAACATGGGGTTGGCGCTGAAATATG CATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAGEST: gi|88245198|gb|CI245047.1|CI245047
genomic: GTAACCCTTGAAGAAGGATTTCCACAACATGGGGTTGGCGCTGAAATATGgtccatctct ... ttctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAG
EST: GTAACCCTTGAAGAAGGATTTCCACAACATGGGGTTGGCGCTGAAATATG CATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAGEST: gi|86495018|gb|CI137651.1|CI137651
genomic: GTAACCCTTGAAGAAGGATTTCCACAACATGGGGTTGGCGCTGAAATATGgtccatctct ... ttctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAG
EST: GTAACCCTTGAAGAAGGATTTCCACAACATGGGGTTGGCGCTGAAATATG CATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAG
genomic: GTAACCCTTGAAGAAGGATTTCCACAACATGGGGTTGGCGCTGAAATATGgtccatctct ... ttctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAG
tctccctcgctctctgtgacaagttgttctcatatgtactgtatcttctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAGGATTGCTGGAGCTGATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGG
tatcttcttt CT-rich tract
atatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccatctctctctctctctctcgctctccctctccctcgctctctgtgacaagttgttctcatatgtactgtatcttctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAGGATTGCTGGAGCTGATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG