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...ttgcttatgttttcctgcataagccataccctagatcgatcttgctattgaagtcctattataccagtctcttatagcattatcttgatgttcctttcagGCTGATTTTGACCCAATAAGATGGCTTGATCGAGCATTAATTAGTATGTGCTCAAAATTTGGAGACTATCAGAAGGAAACACCCTCATCTTTCAGTTTAT
species | Oryza sativa |
transcript | LOC_Os08g36994.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CAGCTGCTGCAGTCATGGCACGCTTGGTCTCATTTAAGATGGAAGCTGAG GCTGATTTTGACEST: gi|29622673|gb|CB627684.1|CB627684
genomic: CAGCTGCTGCAGTCATGGCACGCTTGGTCTCATTTAAGATGGAAGCTGAGgtactccctt ... ttcctttcagGCTGATTTTGAC
EST: CAGCTGCTGCAGTCATGGCACGCTTGGTCTCATTTAAGATGGAAGCTGAG GCTGATTTTGACCCAATAAGATGGCTTGATCGAGCATTAATTAGTATGTGCEST: gi|58656399|gb|CK045079.1|CK045079
genomic: CAGCTGCTGCAGTCATGGCACGCTTGGTCTCATTTAAGATGGAAGCTGAGgtactccctt ... ttcctttcagGCTGATTTTGACCCAATAAGATGGCTTGATCGAGCATTAATTAGTATGTGC
EST: CAGCTGCTGCAGTCATGGCACGCTTGGTCTCATTTAAGATGGAAGCTGAG GCTGATTTTGACCCAATAAGATGGCTTGATCGAGCATTAATTAGTATGTGCEST: gi|396941631|gb|HO188288.1|HO188288
genomic: CAGCTGCTGCAGTCATGGCACGCTTGGTCTCATTTAAGATGGAAGCTGAGgtactccctt ... ttcctttcagGCTGATTTTGACCCAATAAGATGGCTTGATCGAGCATTAATTAGTATGTGC
EST: CAGCTGCTGCAGTCATGGCACGCTTGGTCTCATTTAAGATGGAAGCTGAG GCTGATTTTGACCCAATAAGATGGCTTGATCGAGCATTAATTAGTATGTGC
genomic: CAGCTGCTGCAGTCATGGCACGCTTGGTCTCATTTAAGATGGAAGCTGAGgtactccctt ... ttcctttcagGCTGATTTTGACCCAATAAGATGGCTTGATCGAGCATTAATTAGTATGTGC
tattgaagtcctattataccagtctcttatagcattatcttgatgttcctttcagGCTGATTTTGACCCAATAAGATGGCTTGATCGAGCATTAATTAGTATGTGCTCAAAATTTGGAGACTATCAGAAGGAAACACCCTCATCTTTCAGTTTAT
tcttgat putative branch site (score: 17)
tgttcctttc CT-rich tract
tattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgcttatgttttcctgcataagccataccctagatcgatcttgctattgaagtcctattataccagtctcttatagcattatcttgatgttcctttcagGCTGATTTTGACCCAATAAGATGGCTTGATCGAGCATTAATTAGTATGTGCTCAAAATTTGGAGACTATCAGAAGGAAACACCCTCATCTTTCAGTTTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- gcttatg
- - - - - - tcctgca
- - - - - - - - - - - - cataccc
- - - - - - - - - - - - - - - - - - - - cttgcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgatg