1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...catgttttgattggatccttgaatcgtacagaactctctagtgatattgtactgctaattattaatatttgctagtgtctggtctttgacctttggttagAAATCCCATATTTTCGTGAGGTTATTGTTATGGCAACAACATGCGACATGTGCGGCTATCGCAACTCAGAG
species | Oryza sativa |
transcript | LOC_Os08g36774.1 |
intron # | 10 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: TCACTCGTTTCTTTGCTACAA AAATCCCATATTTTGGTGAGGTTATTGTTATGGCAACAACATGCGACATGTEST: gi|218492385|gb|FG960643.1|FG960643
genomic: TCACTCGTTTCTTTGCTACAAgtatcctttt ... ctttggttagAAATCCCATATTTTCGTGAGGTTATTGTTATGGCAACAACATGCGACATGT
EST: AACATGTGGGGCCTGTGGAACTGAGTGTGTCACTCGTTTCTTTGCTACAA AAATCCCATATTTTCGTGAGGTTATTGTTATGGCAACAACATGCGACATGTEST: gi|218496628|gb|FG960480.1|FG960480
genomic: AACATGTGGGGCCTGTGGAACTGAGTGTGTCACTCGTTTCTTTGCTACAAgtatcctttt ... ctttggttagAAATCCCATATTTTCGTGAGGTTATTGTTATGGCAACAACATGCGACATGT
EST: AACATGTGGGGCCTGTGGAACTGAGTGTGTCACTCGTTTCTTTGCTACAA ATATCCCATATTTTCGTGAGGTTACTGTGATGGCAACAACATGCGACATGT
genomic: AACATGTGGGGCCTGTGGAACTGAGTGTGTCACTCGTTTCTTTGCTACAAgtatcctttt ... ctttggttagAAATCCCATATTTTCGTGAGGTTATTGTTATGGCAACAACATGCGACATGT
attgtactgctaattattaatatttgctagtgtctggtctttgacctttggttagAAATCCCATATTTTCGTGAGGTTATTGTTATGGCAACAACATGCGACATGTGCGGCTATCGCAACTCAGAG
gtctttgac putative branch site
ccttt CT-rich tract
taattattaatatttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgttttgattggatccttgaatcgtacagaactctctagtgatattgtactgctaattattaatatttgctagtgtctggtctttgacctttggttagAAATCCCATATTTTCGTGAGGTTATTGTTATGGCAACAACATGCGACATGTGCGGCTATCGCAACTCAGAG
catgttt
- - - - - -tggatcc
- - - - - - - - - - - - - - - - - - - - - - - - gtactgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttgcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgtctg