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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctaaacttcagagtgatttcttcatgactttttggctacttttgttccagatacagctggaagcacgtgagtcgagagcctatgatttagTTATTCTACGTTCATTACAGGAGTTTACAAAAATCAGGTGCAACAGATGCATCTGGAAATGTGATACTTAGTGACATCGGTGTTCATATGCAACAGAAG

Basic information

species Oryza sativa
transcript LOC_Os08g34050.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g34050.1 (Oryza sativa), 3'ss of exon 10
lower sequence: GRMZM2G139360_T01 (Zea mays), 3'ss of exon 9
gtaagctaaacttcagagtgatttcttcatgactttttggctacttttgttccagataca-gctggaagcac--gtgagtcg---agagcctatgatttag-
||| |||||| |||| ||   | |  ||       | |  |||||| |||||||  || |   ||| |  ||   | ||  |   | | |||||  |||        || || ||| ||   ||||||||  |  | ||| |||||||||| || |||||||| |||||||||||| | |||||||| |||||||| ||||||||||||
gtatgctaaaattcacagctgtctggtc-------tctatctacttctgttccatgtatatagtggcaataccgataagatgcaaaaaacctatagtttgactcgttttcttttaccttttgttacagGATCTACTCCAAGAATCAGGTGCGACTGATGCATCAGGAAATGTGATATTGAGTGACATTGGTGTTCACATGCAACAGAAG

upper sequence: LOC_Os08g34050.1 (Oryza sativa), 3'ss of exon 10
lower sequence: GRMZM2G139360_T02 (Zea mays), 3'ss of exon 11
gtaagctaaacttcagagtgatttcttcatgactttttggctacttttgttccagataca-gctggaagcac--gtgagtcg---agagcctatgatttag-
                                 | | |  |||||| |||||||  || |   ||| |  ||   | ||  |   | | |||||  |||        || || ||| ||   ||||||||  |  | ||| |||||||||| || |||||||| |||||||||||| | |||||||| |||||||| ||||||||||||
--------------------------------gtctctatctacttctgttccatgtatatagtggcaataccgataagatgcaaaaaacctatagtttgactcgttttcttttaccttttgttacagGATCTACTCCAAGAATCAGGTGCGACTGATGCATCAGGAAATGTGATATTGAGTGACATTGGTGTTCACATGCAACAGAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctacttttgttccagatacagctggaagcacgtgagtcgagagcctatgatttagTTATTCTACGTTCATTACAGGAGTTTACAAAAATCAGGTGCAACAGATGCATCTGGAAATGTGATACTTAGTGACATCGGTGTTCATATGCAACAGAAG
                                             tatgattta  TA-rich tract