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gtcagtatatttgcctctgctacatgaacaaaataatttgttgatttggtggactaacatgatgctgtggattatcctcagAATAACTGCATGTTAGGCATGGGAAGTGGCCAGCCAAACAGACTGGAGAGTCTGAGAATTGCTTTCAGGAAAGCAGGAGAGGAGGCCAAAGGAGCTGCTT
species | Oryza sativa |
transcript | LOC_Os08g10570.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CCTGGCTTTGTGTAAAGCACGTAAAGAGTAACGCCATTGTGATAGCCAAG AATAACTGCATGTTAGGCATGGGAAGTGGCCAGCCAAACAGACTGGAGAGTEST: gi|86506616|gb|CI149249.1|CI149249
genomic: CCTGGCTTTGTGTAAAGCACGTAAAGAGTAACGCCATTGTGATAGCCAAGgtcagtatat ... ttatcctcagAATAACTGCATGTTAGGCATGGGAAGTGGCCAGCCAAACAGACTGGAGAGT
EST: CCTGGCTTTGTGTAAAGCACGTAAAGAGTAACGCCATTGTGATAGCCAAG AATAACTGCATGTTAGGCATGGGAAGTGGCCAGCCAAACAGACTGGAGAGTEST: gi|32948504|gb|BP185076.1|BP185076
genomic: CCTGGCTTTGTGTAAAGCACGTAAAGAGTAACGCCATTGTGATAGCCAAGgtcagtatat ... ttatcctcagAATAACTGCATGTTAGGCATGGGAAGTGGCCAGCCAAACAGACTGGAGAGT
EST: CCTGGCTTTGTGTAAAGCACGTAAAGAGTAACGCCATTGTGATAGCCAAG AATAACTGCATGTTAGGCATGGGAAGTGGCCAGCCAAACAGACTGGAGAGTEST: gi|89194604|gb|CI117041.1|CI117041
genomic: CCTGGCTTTGTGTAAAGCACGTAAAGAGTAACGCCATTGTGATAGCCAAGgtcagtatat ... ttatcctcagAATAACTGCATGTTAGGCATGGGAAGTGGCCAGCCAAACAGACTGGAGAGT
EST: CCTGGCTTTGTGTAAAGCACGTAAAGAGTAACGCCATTGTGATAGCCAAG AATAACTGCATGTTAGGCATGGGAAGTGGCCAGCCAAACAGACTGGAGAGTEST: gi|18386202|gb|BM419401.1|BM419401
genomic: CCTGGCTTTGTGTAAAGCACGTAAAGAGTAACGCCATTGTGATAGCCAAGgtcagtatat ... ttatcctcagAATAACTGCATGTTAGGCATGGGAAGTGGCCAGCCAAACAGACTGGAGAGT
EST: CCTGGCTTTGTGTAAAGCACGTAAAGAGTAACGCCATTGTGATAGCCAAG AATAACTGCATGTTAGGCATGGGAAGTGGCCAGCC-AACAGACTGGAGAGTEST: gi|55409415|gb|CV721791.1|CV721791
genomic: CCTGGCTTTGTGTAAAGCACGTAAAGAGTAACGCCATTGTGATAGCCAAGgtcagtatat ... ttatcctcagAATAACTGCATGTTAGGCATGGGAAGTGGCCAGCCAAACAGACTGGAGAGT
EST: CCTGGCTTTGTGTAAAGCACGTAAAGAGTAACGCCATTGTGATAGCCAAG AATAACTGCATGTTAGGCATGGGAAGTGGCCAGCCAAACAGACTGGAGAGTEST: gi|18386348|gb|BM419546.1|BM419546
genomic: CCTGGCTTTGTGTAAAGCACGTAAAGAGTAACGCCATTGTGATAGCCAAGgtcagtatat ... ttatcctcagAATAACTGCATGTTAGGCATGGGAAGTGGCCAGCCAAACAGACTGGAGAGT
EST: CCTGGCTTTGTGTAAAGCACGTAAAGAGTAACGCCATTGTGATAGCCAAG AATAACTGCATGTTAGGCATGGGAAGTGGCCAGCCAAACAGACTGGAGAGTEST: gi|86493028|gb|CI135661.1|CI135661
genomic: CCTGGCTTTGTGTAAAGCACGTAAAGAGTAACGCCATTGTGATAGCCAAGgtcagtatat ... ttatcctcagAATAACTGCATGTTAGGCATGGGAAGTGGCCAGCCAAACAGACTGGAGAGT
EST: CCTGGCTTTGTGTAAAGCACGTAAAGAGTAACGCCATTGTGATAGCCAAG AATAACTGCATGTTAGGCATGGGAAGTGGCCAGCCAAACAGACTGGAGAGT
genomic: CCTGGCTTTGTGTAAAGCACGTAAAGAGTAACGCCATTGTGATAGCCAAGgtcagtatat ... ttatcctcagAATAACTGCATGTTAGGCATGGGAAGTGGCCAGCCAAACAGACTGGAGAGT
aacaaaataatttgttgatttggtggactaacatgatgctgtggattatcctcagAATAACTGCATGTTAGGCATGGGAAGTGGCCAGCCAAACAGACTGGAGAGTCTGAGAATTGCTTTCAGGAAAGCAGGAGAGGAGGCCAAAGGAGCTGCTT
gactaac putative branch site (score: 35)
ttatcctc putative PPT
aataatttgttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtatatttgcctctgctacatgaacaaaataatttgttgatttggtggactaacatgatgctgtggattatcctcagAATAACTGCATGTTAGGCATGGGAAGTGGCCAGCCAAACAGACTGGAGAGTCTGAGAATTGCTTTCAGGAAAGCAGGAGAGGAGGCCAAAGGAGCTGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT