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...gatgattacactgtttacacacgatgaaatcgggtatcatcatttctataaaattaagtaatgatgtgtttatatatgtatgatttgtccatgtgtgtagAGTGCAAATTCAAACCAGAGCAACATGCTGATCCTGCAAGAGAGCTGCACGGACGCGTCGGGCTCCTACGTGGTGTACGCGCCGGTGGACATCGTGGCGA
species | Oryza sativa |
transcript | LOC_Os08g08820.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTGCCAACGGCCGTGACCATGGCAACTCTGTCTCGCTTCTTCGTGTCAAT AGTGCAAATTCAAACCAGAGCAACATGCTGATCCTGCAAGAGAGCTGCACGEST: gi|88689663|gb|CI733239.1|CI733239
genomic: TTGCCAACGGCCGTGACCATGGCAACTCTGTCTCGCTTCTTCGTGTCAATgtaagtgcca ... atgtgtgtagAGTGCAAATTCAAACCAGAGCAACATGCTGATCCTGCAAGAGAGCTGCACG
EST: TTGCCAACGGCCGTGACCATGGCAACTCTGTCTCGCTTCTTCGTGTCAAT AGTGCAAATTCAAACCAGAGCAACATGCTGATCCTGCAAGAEST: gi|4716207|gb|AU057323.1|AU057323
genomic: TTGCCAACGGCCGTGACCATGGCAACTCTGTCTCGCTTCTTCGTGTCAATgtaagtgcca ... atgtgtgtagAGTGCAAATTCAAACCAGAGCAACATGCTGATCCTGCAAGA
EST: TTGCCAACGGCCGTGACCATGGCAACTCTGTCTCGCTTCTTCGTGTCAAT AGTGCAAATTCAAACCAGAGCAACATGCTGATCCTGCAAGAGAGCTGCACGEST: gi|29615392|gb|CB620404.1|CB620404
genomic: TTGCCAACGGCCGTGACCATGGCAACTCTGTCTCGCTTCTTCGTGTCAATgtaagtgcca ... atgtgtgtagAGTGCAAATTCAAACCAGAGCAACATGCTGATCCTGCAAGAGAGCTGCACG
EST: TTGCCAACGGCCGTGACCATGGCAACTCTGTCTCGCTTCTTCGTGTCAAT AGTGCAAATTCAAACCAGAGCAACATGCTGATCCTGCAAGAGAGCTGCACG
genomic: TTGCCAACGGCCGTGACCATGGCAACTCTGTCTCGCTTCTTCGTGTCAATgtaagtgcca ... atgtgtgtagAGTGCAAATTCAAACCAGAGCAACATGCTGATCCTGCAAGAGAGCTGCACG
ctataaaattaagtaatgatgtgtttatatatgtatgatttgtccatgtgtgtagAGTGCAAATTCAAACCAGAGCAACATGCTGATCCTGCAAGAGAGCTGCACGGACGCGTCGGGCTCCTACGTGGTGTACGCGCCGGTGGACATCGTGGCGA
aaattaagtaatgatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatgattacactgtttacacacgatgaaatcgggtatcatcatttctataaaattaagtaatgatgtgtttatatatgtatgatttgtccatgtgtgtagAGTGCAAATTCAAACCAGAGCAACATGCTGATCCTGCAAGAGAGCTGCACGGACGCGTCGGGCTCCTACGTGGTGTACGCGCCGGTGGACATCGTGGCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA