1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttgagctgtaaaaatgctaagtgatagttctaactgaggctccaagttttgaagaaaaagactacagtttggttagttaaccatgtttactgttaaccagGTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAG
species | Oryza sativa |
transcript | LOC_Os08g07960.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTATTCCTTGCAGTACCTTCAACAGTGATGGGTCGATATTTGCTTATGCA GTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCTGCCACTGCAEST: gi|86496217|gb|CI138850.1|CI138850
genomic: CTATTCCTTGCAGTACCTTCAACAGTGATGGGTCGATATTTGCTTATGCAgtaagtcaag ... tgttaaccagGTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCTGCCACTGCA
EST: CTATTCCTTGCAGTACCTTCAACAGTGATGGGTCGATATTTGCTTATGCA GTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCTGCCACTGCAEST: gi|86494783|gb|CI137416.1|CI137416
genomic: CTATTCCTTGCAGTACCTTCAACAGTGATGGGTCGATATTTGCTTATGCAgtaagtcaag ... tgttaaccagGTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCTGCCACTGCA
EST: CTATTCCTTGCAGTACCTTCAACAGTGATGGGTCGATATTTGCTTATGCA GTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCTGCCACTGCAEST: gi|33805337|gb|CF328546.1|CF328546
genomic: CTATTCCTTGCAGTACCTTCAACAGTGATGGGTCGATATTTGCTTATGCAgtaagtcaag ... tgttaaccagGTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCTGCCACTGCA
EST: CTATTCCTTGCAGTACCTTCAACAGTGATGGGTCGATATTTGCTTATGCA GTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCTGCCACTGCAEST: gi|66920288|gb|CX107136.1|CX107136
genomic: CTATTCCTTGCAGTACCTTCAACAGTGATGGGTCGATATTTGCTTATGCAgtaagtcaag ... tgttaaccagGTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCTGCCACTGCA
EST: ATTTGCTTATGCA GTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCTGCCACTGCAEST: gi|86498360|gb|CI140993.1|CI140993
genomic: ATTTGCTTATGCAgtaagtcaag ... tgttaaccagGTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCTGCCACTGCA
EST: CTATTCCTTGCAGTACCTTCAACAGTGATGGGTCGATATTTGCTTATGCA GTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCTGCCACTGCAEST: gi|86597807|gb|CI276593.1|CI276593
genomic: CTATTCCTTGCAGTACCTTCAACAGTGATGGGTCGATATTTGCTTATGCAgtaagtcaag ... tgttaaccagGTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCTGCCACTGCA
EST: CTATTCCTTGCAGTACCTTCAACAGTGATGGGTCGATATTTGCTTATGCA GTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCTGCCACTGCAEST: gi|86421137|gb|CI057126.1|CI057126
genomic: CTATTCCTTGCAGTACCTTCAACAGTGATGGGTCGATATTTGCTTATGCAgtaagtcaag ... tgttaaccagGTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCTGCCACTGCA
EST: GTGATGGGTCGATATTTGCTTATGCA GTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCTGCCACTGCAEST: gi|86503924|gb|CI146557.1|CI146557
genomic: GTGATGGGTCGATATTTGCTTATGCAgtaagtcaag ... tgttaaccagGTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCTGCCACTGCA
EST: CTATTCCTTGCAGTACCTTCAACAGTGATGGGTCGATATTTGCTTATGCA GTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCTGCCACTGCAEST: gi|88243189|gb|CI244311.1|CI244311
genomic: CTATTCCTTGCAGTACCTTCAACAGTGATGGGTCGATATTTGCTTATGCAgtaagtcaag ... tgttaaccagGTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCTGCCACTGCA
EST: CTATTCCTTGCAGTACCTTCAACAGTGATGGGTCGATATTTGCTTATGCA GTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCTGCCACTGCAEST: gi|86494924|gb|CI137557.1|CI137557
genomic: CTATTCCTTGCAGTACCTTCAACAGTGATGGGTCGATATTTGCTTATGCAgtaagtcaag ... tgttaaccagGTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCTGCCACTGCA
EST: ATATTTGCTTATGCA GTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCTGCCACTGCAEST: gi|86498473|gb|CI141106.1|CI141106
genomic: ATATTTGCTTATGCAgtaagtcaag ... tgttaaccagGTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCTGCCACTGCA
EST: CTATTCCTTGCAGTACCTTCAACAGTGATGGGTCGATATTTGCTTATGCA GTCTGCTATGACTGGAGCCGT-GGGCTGAAAACCACAACCCTGCCACTGCAEST: gi|86495339|gb|CI137972.1|CI137972
genomic: CTATTCCTTGCAGTACCTTCAACAGTGATGGGTCGATATTTGCTTATGCAgtaagtcaag ... tgttaaccagGTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCTGCCACTGCA
EST: CTATTCCTTGCAGTACCTTCAACAGTGATGGGTCGATATTTGCTTATGCA GTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCTGCCACTGCAEST: gi|86504575|gb|CI147208.1|CI147208
genomic: CTATTCCTTGCAGTACCTTCAACAGTGATGGGTCGATATTTGCTTATGCAgtaagtcaag ... tgttaaccagGTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCTGCCACTGCA
EST: CTATTCCTTGCAGTACCTTCAACAGTGATGGGTCGATATTTGCTTATGCA GTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCTGCCACTGCAEST: gi|86489810|gb|CI132443.1|CI132443
genomic: CTATTCCTTGCAGTACCTTCAACAGTGATGGGTCGATATTTGCTTATGCAgtaagtcaag ... tgttaaccagGTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCTGCCACTGCA
EST: CTTGCAGTACCTTCAACAGTGATGGGTCGATATTTGCTTATGCA GTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCTGCCACTGCAEST: gi|87007439|gb|CI279110.1|CI279110
genomic: CTTGCAGTACCTTCAACAGTGATGGGTCGATATTTGCTTATGCAgtaagtcaag ... tgttaaccagGTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCTGCCACTGCA
EST: CTATTCCTTGCAGTACCTTCAACAGTGATGGGTCGATATTTGCTTATGCA GTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCTGCCACTGCAEST: gi|86428049|gb|CI073146.1|CI073146
genomic: CTATTCCTTGCAGTACCTTCAACAGTGATGGGTCGATATTTGCTTATGCAgtaagtcaag ... tgttaaccagGTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCTGCCACTGCA
EST: ATTCCTTGCAGTACCTTCAACAGTGATGGGTCGATATTTGCTTATGCA GTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCTGCCACTGCAEST: gi|89198870|gb|CI003607.1|CI003607
genomic: ATTCCTTGCAGTACCTTCAACAGTGATGGGTCGATATTTGCTTATGCAgtaagtcaag ... tgttaaccagGTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCTGCCACTGCA
EST: CTATTCCTTGCAGTACCTTCAACAGTGATGGGTCGATATTTGCTTATGCA GTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCTGCCACTGCAEST: gi|86494277|gb|CI136910.1|CI136910
genomic: CTATTCCTTGCAGTACCTTCAACAGTGATGGGTCGATATTTGCTTATGCAgtaagtcaag ... tgttaaccagGTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCTGCCACTGCA
EST: CTATTCCTTGCAGTACCTTCAACAATGATGGGTCGATATTTGCTTATGCA GTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCTGCCACTGCA
genomic: CTATTCCTTGCAGTACCTTCAACAGTGATGGGTCGATATTTGCTTATGCAgtaagtcaag ... tgttaaccagGTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCTGCCACTGCA
gttttgaagaaaaagactacagtttggttagttaaccatgtttactgttaaccagGTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAG
agttaac putative branch site (score: 3)
aagaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgagctgtaaaaatgctaagtgatagttctaactgaggctccaagttttgaagaaaaagactacagtttggttagttaaccatgtttactgttaaccagGTCTGCTATGACTGGAGCCGTGGGGCTGAAAACCACAACCCTGCCACTGCAAAGACATCCATCTATCTTCACAGTCCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG