1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...attatggcattagctaagctaagcataggattgaacatcatcgtctgagaaatacactgttatatggtaagccaatattcatgtgctgtgctttgtgcagGTAAAAGGATTACTCAAGGAGAAAAGGCTGGAGATGTTGGTTGATCCAGATTTACAGAGCAACTACATTGATGTTGAGGTAGAATCACTAATCCAGGTTG
species | Oryza sativa |
transcript | LOC_Os08g07760.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGATGATGTCATGCTACTGGACTGG GTAAAAGGATTACTCAAGGAGAAAAGGCTGGAGATGTTGGTTGATCCAGATEST: gi|58598010|gb|CK008538.1|CK008538
genomic: TGATGATGTCATGCTACTGGACTGGgtaattgact ... ctttgtgcagGTAAAAGGATTACTCAAGGAGAAAAGGCTGGAGATGTTGGTTGATCCAGAT
EST: TTGACCTTGCTCGTCTAGCCAATGATGATGATGTCATGCTACTGGACTGG GTAAAAGGATTACTCAAGGAGAAAAGGCTGGAGATGTTGGTTGATCCAGATEST: gi|66917161|gb|CX104009.1|CX104009
genomic: TTGACCTTGCTCGTCTAGCCAATGATGATGATGTCATGCTACTGGACTGGgtaattgact ... ctttgtgcagGTAAAAGGATTACTCAAGGAGAAAAGGCTGGAGATGTTGGTTGATCCAGAT
EST: TTGACCTTGCTCGTCTAGCCAATGATGATGATGTCATGCTACTGGACTGG GTAAAAGGATTACTCAAGGAGAAAAGGCTGGAGATGTTGGTTGATCCAGATEST: gi|58657733|gb|CK046413.1|CK046413
genomic: TTGACCTTGCTCGTCTAGCCAATGATGATGATGTCATGCTACTGGACTGGgtaattgact ... ctttgtgcagGTAAAAGGATTACTCAAGGAGAAAAGGCTGGAGATGTTGGTTGATCCAGAT
EST: TTGACCTTGCTCGTCTAGCCAATGATGATGATGTCATGCTACTGGACTGG GTAAAAGGATTACTCAAGGAGAAAAGGCTGGAGATGTTGGTTGATCCAGAT
genomic: TTGACCTTGCTCGTCTAGCCAATGATGATGATGTCATGCTACTGGACTGGgtaattgact ... ctttgtgcagGTAAAAGGATTACTCAAGGAGAAAAGGCTGGAGATGTTGGTTGATCCAGAT
tgagaaatacactgttatatggtaagccaatattcatgtgctgtgctttgtgcagGTAAAAGGATTACTCAAGGAGAAAAGGCTGGAGATGTTGGTTGATCCAGATTTACAGAGCAACTACATTGATGTTGAGGTAGAATCACTAATCCAGGTTG
aatattcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attatggcattagctaagctaagcataggattgaacatcatcgtctgagaaatacactgttatatggtaagccaatattcatgtgctgtgctttgtgcagGTAAAAGGATTACTCAAGGAGAAAAGGCTGGAGATGTTGGTTGATCCAGATTTACAGAGCAACTACATTGATGTTGAGGTAGAATCACTAATCCAGGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA