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...catacatatatatatatatatatatatatatatatatgatgtgcttgattaagctttggataggatcggtttctttctgatggctgtctgccattttcagGTGCGGTACCAGAGCAGAAAGAGGCTGGCCGAGCAGCGGCCAAGGGTCCGCGGACAGTTCGTGCGGCAAGCTGTGCAAGACCAACAACAGCAGGGTGGTG
species | Oryza sativa |
transcript | LOC_Os07g49460.3 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CAGTGATCAAGTTTAGACAGAAAAGGAAAGAGCGCAACTTCGGAAAAAAG GTGCGGTACCAGAGCAGAAAGAGGCTGGCCGAGCAGCGGCCAAGGGTCCGCEST: gi|218479723|gb|FG953390.1|FG953390
genomic: CAGTGATCAAGTTTAGACAGAAAAGGAAAGAGCGCAACTTCGGAAAAAAGgtagcctgtt ... ccattttcagGTGCGGTACCAGAGCAGAAAGAGGCTGGCCGAGCAGCGGCCAAGGGTCCGC
EST: CAGTGATCAAGTTTAGACAGAAAAGGAAAGAGCGCAACTTCGGAAAAAAG GTGCGGTACCAGAGCAGAAAGAGGCTGGCCGAGCAGCGGCCAAGGGTCCGCEST: gi|25799920|gb|CA755881.1|CA755881
genomic: CAGTGATCAAGTTTAGACAGAAAAGGAAAGAGCGCAACTTCGGAAAAAAGgtagcctgtt ... ccattttcagGTGCGGTACCAGAGCAGAAAGAGGCTGGCCGAGCAGCGGCCAAGGGTCCGC
EST: CAGTGATCAAGTTTAGACAGAAAAGGAAAGAGCGCAACTTCGGAAAAAAG GTGCGGTACCAGAGCAGAAAGAGGCTGGCCGAGCAGCGGCCAAGGGTCCGCEST: gi|88691241|gb|CI733825.1|CI733825
genomic: CAGTGATCAAGTTTAGACAGAAAAGGAAAGAGCGCAACTTCGGAAAAAAGgtagcctgtt ... ccattttcagGTGCGGTACCAGAGCAGAAAGAGGCTGGCCGAGCAGCGGCCAAGGGTCCGC
EST: CAGTGATCAAGTTTAGACAGAAAAGGAAAGAGCGCAACTTCGGAAAAAAG GTGCGGTACCAGAGCAGAAAGAGGCTGGCCGAGCAGCGGCCAAGGGTCCGCEST: gi|58670257|gb|CK058943.1|CK058943
genomic: CAGTGATCAAGTTTAGACAGAAAAGGAAAGAGCGCAACTTCGGAAAAAAGgtagcctgtt ... ccattttcagGTGCGGTACCAGAGCAGAAAGAGGCTGGCCGAGCAGCGGCCAAGGGTCCGC
EST: CAGTGATCAAGTTTAGACAGAAAAGGAAAGAGCGCAACTTCGGAAAAAAG GTGCGGTACCAGAGCAGAAAGAGGCTGGCCGAGCAGCGGCCAAGGGTCCGCEST: gi|88728157|gb|CI751667.1|CI751667
genomic: CAGTGATCAAGTTTAGACAGAAAAGGAAAGAGCGCAACTTCGGAAAAAAGgtagcctgtt ... ccattttcagGTGCGGTACCAGAGCAGAAAGAGGCTGGCCGAGCAGCGGCCAAGGGTCCGC
EST: CAGTGATCAAGTTTAGACAGAAAAGGAAAGAGCGCAACTTCGGAAAAAAG GTGCGGTACCAGAGCAGAAAGAGGCTGGCCGAGCAGCGGCCAAGGGTCCGCEST: gi|86858976|gb|CI275166.1|CI275166
genomic: CAGTGATCAAGTTTAGACAGAAAAGGAAAGAGCGCAACTTCGGAAAAAAGgtagcctgtt ... ccattttcagGTGCGGTACCAGAGCAGAAAGAGGCTGGCCGAGCAGCGGCCAAGGGTCCGC
EST: AGTGATCAAGTTTAGACAGAAAAGGAAAGAGCGCAACTTCGGAAAAAAG GTGCGGTACCAGAGCAGAAAGAGGCTGGCCGAGCAGCGGCCAAGGGTCCGCEST: gi|38478820|gb|CF962953.1|CF962953
genomic: AGTGATCAAGTTTAGACAGAAAAGGAAAGAGCGCAACTTCGGAAAAAAGgtagcctgtt ... ccattttcagGTGCGGTACCAGAGCAGAAAGAGGCTGGCCGAGCAGCGGCCAAGGGTCCGC
EST: AAAGAGCGCAACTTCGGAAAAAAG GTGCGGTA-CAGAGCAGAAAGAGGCTGGCCGAGCAGCGGCCAAGGGTCCGCEST: gi|86479559|gb|CI122192.1|CI122192
genomic: AAAGAGCGCAACTTCGGAAAAAAGgtagcctgtt ... ccattttcagGTGCGGTACCAGAGCAGAAAGAGGCTGGCCGAGCAGCGGCCAAGGGTCCGC
EST: GATCAAGTTTAGACAGAAAAGGAAAGAGCGCAACTTCGGAAAAAAG GTGCGGTACCAGAGCAGAAAGAGGCTGGCCGAGCAGCGGCCAAGGGTCCGCEST: gi|38475943|gb|CF960076.1|CF960076
genomic: GATCAAGTTTAGACAGAAAAGGAAAGAGCGCAACTTCGGAAAAAAGgtagcctgtt ... ccattttcagGTGCGGTACCAGAGCAGAAAGAGGCTGGCCGAGCAGCGGCCAAGGGTCCGC
EST: CAGTGATCAAGTTTAGACAGAAAAGGACAGAGCGCAACTTCGGAAAAAAG GTGCGGTACCAGAGCAGAAAGAGGCTGGCCGAGCAGCGGCCAAGGGTCCGC
genomic: CAGTGATCAAGTTTAGACAGAAAAGGAAAGAGCGCAACTTCGGAAAAAAGgtagcctgtt ... ccattttcagGTGCGGTACCAGAGCAGAAAGAGGCTGGCCGAGCAGCGGCCAAGGGTCCGC
tgattaagctttggataggatcggtttctttctgatggctgtctgccattttcagGTGCGGTACCAGAGCAGAAAGAGGCTGGCCGAGCAGCGGCCAAGGGTCCGCGGACAGTTCGTGCGGCAAGCTGTGCAAGACCAACAACAGCAGGGTGGTG
ttctgat putative branch site (score: 3)
ccattttc putative PPT
tttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catacatatatatatatatatatatatatatatatatgatgtgcttgattaagctttggataggatcggtttctttctgatggctgtctgccattttcagGTGCGGTACCAGAGCAGAAAGAGGCTGGCCGAGCAGCGGCCAAGGGTCCGCGGACAGTTCGTGCGGCAAGCTGTGCAAGACCAACAACAGCAGGGTGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
catacat
- - - - - - - - - - - - - - - - - - - - gtgcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgtctg