1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtcagagcatgtccttagtatttaattatctattttgctactcaacttaacataatttttattgtttctagGAAACTAGATGGTCAAGTTGGCGTTTAAAAAATTACTTTTCTGCTGGGGCCATGCTTTGGATATTGTCTGGTGTTGGAATTGTTGTTCTACCAAGTGGAA
species | Oryza sativa |
transcript | LOC_Os07g39010.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TACCTGCTATTATCTATGTCTGCAGCTTGATAGTATCTGTCATATTACAG GAAACTAGATGGTCAAGTTGGCGTTTAAAAAATTACTTTTCTGCTGGGGCCEST: gi|29630236|gb|CB635245.1|CB635245
genomic: TACCTGCTATTATCTATGTCTGCAGCTTGATAGTATCTGTCATATTACAGgtcagagcat ... ttgtttctagGAAACTAGATGGTCAAGTTGGCGTTTAAAAAATTACTTTTCTGCTGGGGCC
EST: TACCTGCTATTATCTATGTCTGCAGCTTGATAGTATCTGTCATATTACAG GAAACTAGATGGTCAAGTTGGCGTTTAAAAAATTACTTTTCTGCTGGGGCCEST: gi|29630208|gb|CB635217.1|CB635217
genomic: TACCTGCTATTATCTATGTCTGCAGCTTGATAGTATCTGTCATATTACAGgtcagagcat ... ttgtttctagGAAACTAGATGGTCAAGTTGGCGTTTAAAAAATTACTTTTCTGCTGGGGCC
EST: TACCTGCTATTATCTATGTCTGCAGCTTGATAGTATCTGTCATATTACAG GAAACTAGATGGTCAAGTTGGCGTTTAAAAAATTACTTTTCTGCTGGGGCC
genomic: TACCTGCTATTATCTATGTCTGCAGCTTGATAGTATCTGTCATATTACAGgtcagagcat ... ttgtttctagGAAACTAGATGGTCAAGTTGGCGTTTAAAAAATTACTTTTCTGCTGGGGCC
agtatttaattatctattttgctactcaacttaacataatttttattgtttctagGAAACTAGATGGTCAAGTTGGCGTTTAAAAAATTACTTTTCTGCTGGGGCCATGCTTTGGATATTGTCTGGTGTTGGAATTGTTGTTCTACCAAGTGGAA
acttaac putative branch site (score: 10)
tttttattgtttct putative PPT
aacttaacataatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagagcatgtccttagtatttaattatctattttgctactcaacttaacataatttttattgtttctagGAAACTAGATGGTCAAGTTGGCGTTTAAAAAATTACTTTTCTGCTGGGGCCATGCTTTGGATATTGTCTGGTGTTGGAATTGTTGTTCTACCAAGTGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA