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...ttaaatttgcatgtatgcaattgaacggacatcatcaagttttctccttgcaaaggggagtatttgctatcatggcataaagattttcattgctgggcagATTGACAGTAACACAGATGGATTAGTTGATTTCGAAGAGTTTGTTGCTGCAACATTACATGTGCATCAGCTAGTGGAACATGATACTGAGAAGTGGAAAT
species | Oryza sativa |
transcript | LOC_Os07g22710.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AGAGATTGTTGAGGCA ATTGACAGTAACACAGATGGATTAGTTGATTTCGAAGAGTTTGTTGCTGCAEST: gi|88507876|gb|CI435382.1|CI435382
genomic: AGAGATTGTTGAGGCAgtatgttctc ... tgctgggcagATTGACAGTAACACAGATGGATTAGTTGATTTCGAAGAGTTTGTTGCTGCA
EST: GATTGTTGAGGCA ATTGACAGTAACACAGATGGATTAGTTGATTTCGAAGAGTTTGTTGCTGCAEST: gi|29676797|gb|CB673072.1|CB673072
genomic: GATTGTTGAGGCAgtatgttctc ... tgctgggcagATTGACAGTAACACAGATGGATTAGTTGATTTCGAAGAGTTTGTTGCTGCA
EST: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATTGTTGAGGCA ATTGACAGTAACACAGATGGATTAGTTGATTTCGAAGAGTTTGTTGCTGCAEST: gi|29628582|gb|CB633593.1|CB633593
genomic: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATTGTTGAGGCAgtatgttctc ... tgctgggcagATTGACAGTAACACAGATGGATTAGTTGATTTCGAAGAGTTTGTTGCTGCA
EST: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATTGTTGAGGCA ATTGACAGTAACACAGATGGATTAGTTGATTTCGAAGAGTTTGTTGCTGCAEST: gi|86828581|gb|CI278671.1|CI278671
genomic: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATTGTTGAGGCAgtatgttctc ... tgctgggcagATTGACAGTAACACAGATGGATTAGTTGATTTCGAAGAGTTTGTTGCTGCA
EST: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATTGTTGAGGCA ATTGACAGTAACACAGATGGATTAGTTGATTTCGAAGAGTTTGTTGCTGCAEST: gi|29682050|gb|CB678325.1|CB678325
genomic: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATTGTTGAGGCAgtatgttctc ... tgctgggcagATTGACAGTAACACAGATGGATTAGTTGATTTCGAAGAGTTTGTTGCTGCA
EST: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATTGTTGAGGCA ATTGACAGTAACACAGATGGATTAGTTGATTTAGAAGAGTTTGTTGCTGCAEST: gi|86433426|gb|CI093769.1|CI093769
genomic: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATTGTTGAGGCAgtatgttctc ... tgctgggcagATTGACAGTAACACAGATGGATTAGTTGATTTCGAAGAGTTTGTTGCTGCA
EST: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATTGTTGAGGCA ATTGACAGTAACACAGATGGATTAGTTGATTTCGAAGAGTTTGTTGCTGCAEST: gi|86882883|gb|CI314184.1|CI314184
genomic: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATTGTTGAGGCAgtatgttctc ... tgctgggcagATTGACAGTAACACAGATGGATTAGTTGATTTCGAAGAGTTTGTTGCTGCA
EST: ATATTCCAT-GAGATTAAAGGGTCCACGTGTTTTAGAGATTGTTGAGGCA ATTGACAGTAACACAGATGGATTAGTTGATTTCGAAGAGTTTGTTGCTGCA
genomic: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATTGTTGAGGCAgtatgttctc ... tgctgggcagATTGACAGTAACACAGATGGATTAGTTGATTTCGAAGAGTTTGTTGCTGCA
ccttgcaaaggggagtatttgctatcatggcataaagattttcattgctgggcagATTGACAGTAACACAGATGGATTAGTTGATTTCGAAGAGTTTGTTGCTGCAACATTACATGTGCATCAGCTAGTGGAACATGATACTGAGAAGTGGAAAT
ttttcatt CT-rich tract
ataaagattttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaaatttgcatgtatgcaattgaacggacatcatcaagttttctccttgcaaaggggagtatttgctatcatggcataaagattttcattgctgggcagATTGACAGTAACACAGATGGATTAGTTGATTTCGAAGAGTTTGTTGCTGCAACATTACATGTGCATCAGCTAGTGGAACATGATACTGAGAAGTGGAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - -tgcatgt
- - - - - - - - gcaattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggcata