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gtaagtcatcgcagaaatatcaagtgtatgtaggttagacatatgaccaaaaaactgcatttgaaataaacatttaattcgatttgcttttcagAGTTATGATGCCACAACACACTTTGAGTCTACTGTGATGGATGTTCTTTCCATCTATACAAAGATCACCGGAAAG
species | Oryza sativa |
transcript | LOC_Os07g16970.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GATTTGAACCTACTAATGACCCATCTTCAGACAATTGTTTCATCTCAACA AGTTATGATGCCACAACACACTTTGAGTCTACTGTGATGGATGTTCTTTCCEST: gi|44676146|gb|CR289580.1|CR289580
genomic: GATTTGAACCTACTAATGACCCATCTTCAGACAATTGTTTCATCTCAACAgtaagtcatc ... tgcttttcagAGTTATGATGCCACAACACACTTTGAGTCTACTGTGATGGATGTTCTTTCC
EST: GATTTGAACCTACTAATGACCCATCTTCAGACAATTGTTTCATCTCAACA AGTTATGATGCCACAACACACTTTGAGTCTACTGTGATGGATGTTCTTTCCEST: gi|88257202|gb|CI359590.1|CI359590
genomic: GATTTGAACCTACTAATGACCCATCTTCAGACAATTGTTTCATCTCAACAgtaagtcatc ... tgcttttcagAGTTATGATGCCACAACACACTTTGAGTCTACTGTGATGGATGTTCTTTCC
EST: CTTCAGACAATTGTTTCATCTCAACA AGTTATGATGCCACAACACACTTTGAGTCTACTGTGATGGATGTTCTTTCCEST: gi|86838203|gb|CI343373.1|CI343373
genomic: CTTCAGACAATTGTTTCATCTCAACAgtaagtcatc ... tgcttttcagAGTTATGATGCCACAACACACTTTGAGTCTACTGTGATGGATGTTCTTTCC
EST: CCATCTTCAGACAATTGTTTCATCTCAACA AGTTATGATGCCACAACACACTTTGAGTCTACTGTGATGGATGTTCTTTCCEST: gi|86838076|gb|CI343326.1|CI343326
genomic: CCATCTTCAGACAATTGTTTCATCTCAACAgtaagtcatc ... tgcttttcagAGTTATGATGCCACAACACACTTTGAGTCTACTGTGATGGATGTTCTTTCC
EST: TCAGACAATTGTTTCATCTCAACA AGTTATGATGCCACAACACACTTTGAGTCTACTGTGATGGATGTTCTTTCCEST: gi|29624787|gb|CB629798.1|CB629798
genomic: TCAGACAATTGTTTCATCTCAACAgtaagtcatc ... tgcttttcagAGTTATGATGCCACAACACACTTTGAGTCTACTGTGATGGATGTTCTTTCC
EST: GATTTGAACCTACTAATGACCCATCTTCAGACAATTGTTTCATCTCAACA AGTTATGATGCCACAACACACTTTGAGTCTACTGTGATGGATGTTCTTTCCEST: gi|88840159|gb|CI079613.1|CI079613
genomic: GATTTGAACCTACTAATGACCCATCTTCAGACAATTGTTTCATCTCAACAgtaagtcatc ... tgcttttcagAGTTATGATGCCACAACACACTTTGAGTCTACTGTGATGGATGTTCTTTCC
EST: TAATGACCCATCTTCAGACAATTGTTTCATCTCAACA AGTTATGATGCCACAACACACTTTGAGTCTACTGTGATGGATGTTCTTTCC
genomic: TAATGACCCATCTTCAGACAATTGTTTCATCTCAACAgtaagtcatc ... tgcttttcagAGTTATGATGCCACAACACACTTTGAGTCTACTGTGATGGATGTTCTTTCC
catatgaccaaaaaactgcatttgaaataaacatttaattcgatttgcttttcagAGTTATGATGCCACAACACACTTTGAGTCTACTGTGATGGATGTTCTTTCCATCTATACAAAGATCACCGGAAAG
atttaat putative branch site (score: 15)
tttgcttttc putative PPT
atttgaaataaacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcatcgcagaaatatcaagtgtatgtaggttagacatatgaccaaaaaactgcatttgaaataaacatttaattcgatttgcttttcagAGTTATGATGCCACAACACACTTTGAGTCTACTGTGATGGATGTTCTTTCCATCTATACAAAGATCACCGGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA