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gtatgtcgttcttcacctagcttttaccgtgtaatagtttcgttatcgacccaacattctctaacattagtgaatcttgtagGCTGAGAAGGCTGCTTTTGACGAGGCAGAGAAAAAGAAGGAAGAGGAGGTAAATTCCTTCACCTTACAATGTTCTAATATGAGGATGATGGATGTACAAC
species | Oryza sativa |
transcript | LOC_Os07g14270.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTGAGTTGGCCAAGACATTCGCAGAGGAGACATGGGGCAAGCACAAGGAT GCTGAGAAGGCTGCTTTTGACGAGGCAGAGEST: gi|27548814|gb|CA766773.2|CA766773
genomic: CTGAGTTGGCCAAGACATTCGCAGAGGAGACATGGGGCAAGCACAAGGATgtatgtcgtt ... aatcttgtagGCTGAGAAGGCTGCTTTTGACGAGGCAGAG
EST: GAGACAAGGGGCAAGCACAAGGAT GCTGAGAAGGCTGCTTTTGACGAGGCAGAGAAAAAGAAGGAAGAGGAGGTAEST: gi|58679227|gb|CK067914.1|CK067914
genomic: GAGACATGGGGCAAGCACAAGGATgtatgtcgtt ... aatcttgtagGCTGAGAAGGCTGCTTTTGACGAGGCAGAGAAAAAGAAGGAAGAGGAGGTA
EST: CTGAGTTGGCCAAGACATTCGCAGAGGAGACATGGGGCAAGCACAAGGAT GCTGAGAAGGCTGCTTTTGACGAGGCAGAGAAAAAGAAGGAAGAGGAGGEST: gi|66915891|gb|CX102739.1|CX102739
genomic: CTGAGTTGGCCAAGACATTCGCAGAGGAGACATGGGGCAAGCACAAGGATgtatgtcgtt ... aatcttgtagGCTGAGAAGGCTGCTTTTGACGAGGCAGAGAAAAAGAAGGAAGAGGAGG
EST: CTGAGTTGGCCAAGACATTCGCAGAGGAGACATGGGGCAAGCACAAGGAT GCTGAGAAGGCTGCTTTTGACGAGGCAGAGAAAAAGEST: gi|8856749|gb|AU094067.1|AU094067
genomic: CTGAGTTGGCCAAGACATTCGCAGAGGAGACATGGGGCAAGCACAAGGATgtatgtcgtt ... aatcttgtagGCTGAGAAGGCTGCTTTTGACGAGGCAGAGAAAAAG
EST: CTGAGTTGGCCAAGACATTCGCAGAGGAGACATGGGGCAAGCACAAGGAT GCTGAGAAGGCTGCTTTTGACGAGGCAGAG
genomic: CTGAGTTGGCCAAGACATTCGCAGAGGAGACATGGGGCAAGCACAAGGATgtatgtcgtt ... aatcttgtagGCTGAGAAGGCTGCTTTTGACGAGGCAGAG
cgtgtaatagtttcgttatcgacccaacattctctaacattagtgaatcttgtagGCTGAGAAGGCTGCTTTTGACGAGGCAGAGAAAAAGAAGGAAGAGGAGGTAAATTCCTTCACCTTACAATGTTCTAATATGAGGATGATGGATGTACAAC
ctctaac putative branch site (score: 2)
aatagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtcgttcttcacctagcttttaccgtgtaatagtttcgttatcgacccaacattctctaacattagtgaatcttgtagGCTGAGAAGGCTGCTTTTGACGAGGCAGAGAAAAAGAAGGAAGAGGAGGTAAATTCCTTCACCTTACAATGTTCTAATATGAGGATGATGGATGTACAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA