1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgagctactttcttttctctctcggttagaacaaggtagagagaacttctaccttatacattcgtatcactgtatgttcttgttggtaaatgttgcctgccagcgtgtattgttttcacgaaagaagagagatgagggaaaaaaaacaatgctgacaattctgttgctctgcgtcttccagGTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTTCTGATGAAGCAGCTTCTGTATTTTGATCGCTACACAAGATTGTTGGCTC
species | Oryza sativa |
transcript | LOC_Os07g12530.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTAATGTTGTCGTTGACGAGAGACAGATGAATGCATTGTTTCTTGATCTG GTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTTEST: gi|29615294|gb|CB620306.1|CB620306
genomic: CTAATGTTGTCGTTGACGAGAGACAGATGAATGCATTGTTTCTTGATCTGgtgagctact ... cgtcttccagGTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTT
EST: CTAATGTTGTCGTTGACGATAGACAGATGAATGCATTGTTTCTTGATCTG GTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTTEST: gi|88224661|gb|CI224510.1|CI224510
genomic: CTAATGTTGTCGTTGACGAGAGACAGATGAATGCATTGTTTCTTGATCTGgtgagctact ... cgtcttccagGTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTT
EST: CTAATGTTGTCGTTGACGAGAGACAGATGAATGCATTGTTTCTTGATCTG GTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTTEST: gi|29615506|gb|CB620518.1|CB620518
genomic: CTAATGTTGTCGTTGACGAGAGACAGATGAATGCATTGTTTCTTGATCTGgtgagctact ... cgtcttccagGTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTT
EST: CTAATGTTGTCGTTGACGATAGACAGATGAATGCATTGTTTCTTGATCTG GTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTTEST: gi|29615267|gb|CB620279.1|CB620279
genomic: CTAATGTTGTCGTTGACGAGAGACAGATGAATGCATTGTTTCTTGATCTGgtgagctact ... cgtcttccagGTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTT
EST: CTAATGTTGTCGTTGACGATAGACAGATGAATGCATTGTTTCTTGATCTG GTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTTEST: gi|88479196|gb|CI416467.1|CI416467
genomic: CTAATGTTGTCGTTGACGAGAGACAGATGAATGCATTGTTTCTTGATCTGgtgagctact ... cgtcttccagGTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTT
EST: CATTGTTTCTTGATCTG GTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTTEST: gi|88560254|gb|CI490900.1|CI490900
genomic: CATTGTTTCTTGATCTGgtgagctact ... cgtcttccagGTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTT
EST: TTTCTTGATCTG GTGAGGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTEST: gi|88491054|gb|CI428326.1|CI428326
genomic: TTTCTTGATCTGgtgagctact ... cgtcttccagGTGA-GGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCT
EST: GATGAATGCATTGTTTCTTGATCTG GTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTTEST: gi|88541550|gb|CI470827.1|CI470827
genomic: GATGAATGCATTGTTTCTTGATCTGgtgagctact ... cgtcttccagGTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTT
EST: ACAGATGAATGCATTGTTTCTTGATCTG GTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTTEST: gi|29615259|gb|CB620271.1|CB620271
genomic: ACAGATGAATGCATTGTTTCTTGATCTGgtgagctact ... cgtcttccagGTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTT
EST: CTAATGTTGTCGTTGACGATAGACAGATGAATGCATTGTTTCTTGATCTG GTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTTEST: gi|29615076|gb|CB620089.1|CB620089
genomic: CTAATGTTGTCGTTGACGAGAGACAGATGAATGCATTGTTTCTTGATCTGgtgagctact ... cgtcttccagGTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTT
EST: CTAATGTTGTCGTTGACGATAGACAGATGAATGCATTGTTTCTTGATCTG GTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGGGAATTCGCTCTTEST: gi|86888115|gb|CI300015.1|CI300015
genomic: CTAATGTTGTCGTTGACGAGAGACAGATGAATGCATTGTTTCTTGATCTGgtgagctact ... cgtcttccagGTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTT
EST: CTAATGTTGTCGTTGACGAGAGACAGATGAATGCATTGTTTCTTGATCTG GTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTTEST: gi|88465704|gb|CI524654.1|CI524654
genomic: CTAATGTTGTCGTTGACGAGAGACAGATGAATGCATTGTTTCTTGATCTGgtgagctact ... cgtcttccagGTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTT
EST: GTAATGTTGTCGTTGACGAGAGACAGATGAATGCATTGTTTCTTGATCTG GTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTTEST: gi|88971605|gb|CI388850.1|CI388850
genomic: CTAATGTTGTCGTTGACGAGAGACAGATGAATGCATTGTTTCTTGATCTGgtgagctact ... cgtcttccagGTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTT
EST: GACGAGAGACAGATGAATGCATGGTTTCGTGATCTG GTGAGGGTCAGCGAGTCGTATGGATGGAAATTTCCTCGCCAATTCGCTCTTEST: gi|88487221|gb|CI424492.1|CI424492
genomic: GACGAGAGACAGATGAATGCATTGTTTCTTGATCTGgtgagctact ... cgtcttccagGTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTT
EST: ACAGATGAATGCATTGTTTCTTGATCTG GTGAGGGTCAGCGAGTCGTATGGATT-AAATTTCCTCGCGAATTCGCTCTTEST: gi|29619071|gb|CB624083.1|CB624083
genomic: ACAGATGAATGCATTGTTTCTTGATCTGgtgagctact ... cgtcttccagGTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTT
EST: CTAATGTTGTCGTTGACGATAGACAGATGAATGCATTGTTTCTTGATCTG GTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTTEST: gi|88519287|gb|CI446941.1|CI446941
genomic: CTAATGTTGTCGTTGACGAGAGACAGATGAATGCATTGTTTCTTGATCTGgtgagctact ... cgtcttccagGTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTT
EST: GAGACAGATGAATGCATTGTTTCTTGATCTG GTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCCCGAATTCGCTCTTEST: gi|88530343|gb|CI458730.1|CI458730
genomic: GAGACAGATGAATGCATTGTTTCTTGATCTGgtgagctact ... cgtcttccagGTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTT
EST: CTAATGTTGTCNTTGACGAGAGACAGATGAATGCATTGTTTCTTGATCTG GTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTTEST: gi|29615292|gb|CB620304.1|CB620304
genomic: CTAATGTTGTCGTTGACGAGAGACAGATGAATGCATTGTTTCTTGATCTGgtgagctact ... cgtcttccagGTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTT
EST: CTAATGTTGTCGTTGACGATAGACAGATGAATGCATTGTTTCTTGATCTG GTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTTEST: gi|86254363|gb|CI059090.1|CI059090
genomic: CTAATGTTGTCGTTGACGAGAGACAGATGAATGCATTGTTTCTTGATCTGgtgagctact ... cgtcttccagGTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTT
EST: CTAATGTTGTCGTTGACGAGAGACAGATGAATGCATTGTTTCTTGATCTG GTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTTEST: gi|88998076|gb|CI037961.1|CI037961
genomic: CTAATGTTGTCGTTGACGAGAGACAGATGAATGCATTGTTTCTTGATCTGgtgagctact ... cgtcttccagGTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTT
EST: CTAATGTTGTCGTTGACGAGAGACAGATGAATGCATTGTTTCTTGATCTG GTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTTEST: gi|89183900|gb|CI046465.1|CI046465
genomic: CTAATGTTGTCGTTGACGAGAGACAGATGAATGCATTGTTTCTTGATCTGgtgagctact ... cgtcttccagGTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTT
EST: CTAATGTTGTCGTTGACGAGAGACAGATGAATGCATTGTTTCTTGATCTG GTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTTEST: gi|88513426|gb|CI440932.1|CI440932
genomic: CTAATGTTGTCGTTGACGAGAGACAGATGAATGCATTGTTTCTTGATCTGgtgagctact ... cgtcttccagGTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTT
EST: GATGAATGCATTGTTTCTTGATCTG GTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTTEST: gi|29615297|gb|CB620309.1|CB620309
genomic: GATGAATGCATTGTTTCTTGATCTGgtgagctact ... cgtcttccagGTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTT
EST: CTAATGTTGTCGTTGACGATAGACAGATGAATGCATTGTTTCTTGATCTG GTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTTEST: gi|88469764|gb|CI407035.1|CI407035
genomic: CTAATGTTGTCGTTGACGAGAGACAGATGAATGCATTGTTTCTTGATCTGgtgagctact ... cgtcttccagGTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTT
EST: CATTGTTTCTTGATCTG GTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCNCGAATTCGCTCTTEST: gi|29615223|gb|CB620236.1|CB620236
genomic: CATTGTTTCTTGATCTGgtgagctact ... cgtcttccagGTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTT
EST: CTAATGTTGTCGTTGACGATAGACAGATGAATGCATTGTTTCTTGATCTG GTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTTEST: gi|88974078|gb|CI002740.1|CI002740
genomic: CTAATGTTGTCGTTGACGAGAGACAGATGAATGCATTGTTTCTTGATCTGgtgagctact ... cgtcttccagGTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTT
EST: TGTTTCTTGATCTG GTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTTEST: gi|88518906|gb|CI446560.1|CI446560
genomic: TGTTTCTTGATCTGgtgagctact ... cgtcttccagGTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTT
EST: GACAGATGAATGCATTGTTTCTGGATCTG GTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCNCGAATTCGCTCTTEST: gi|86493802|gb|CI136435.1|CI136435
genomic: GACAGATGAATGCATTGTTTCTTGATCTGgtgagctact ... cgtcttccagGTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTT
EST: CTAATGTTGTCGTTGACGAGAGACAGATGAATGCATTGTTTCTTGATCTG GTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTTEST: gi|88508934|gb|CI436440.1|CI436440
genomic: CTAATGTTGTCGTTGACGAGAGACAGATGAATGCATTGTTTCTTGATCTGgtgagctact ... cgtcttccagGTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTT
EST: TGTTGTCGTTGACGAGAGACAGATGAATGCATTNTTTCTTGATCTG GTGAGGGTCAGCGAGTCNTATGGATTGAAATTTCCTCGCGAATTCGCTCTTEST: gi|113931013|gb|DQ884108.1|DQ884108
genomic: TGTTGTCGTTGACGAGAGACAGATGAATGCATTGTTTCTTGATCTGgtgagctact ... cgtcttccagGTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTT
EST: CTAATGTTGTCGTTGACGATAGACAGATGAATGCATTGTTTCTTGATCTG GTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCEST: gi|88964216|gb|CI045409.1|CI045409
genomic: CTAATGTTGTCGTTGACGAGAGACAGATGAATGCATTGTTTCTTGATCTGgtgagctact ... cgtcttccagGTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTC
EST: CTAATGTTGTCGTTGACGAGAGACAGATGAATGCATTGTTTCTTGATCTG GTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTT
genomic: CTAATGTTGTCGTTGACGAGAGACAGATGAATGCATTGTTTCTTGATCTGgtgagctact ... cgtcttccagGTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTT
gagagatgagggaaaaaaaacaatgctgacaattctgttgctctgcgtcttccagGTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTTCTGATGAAGCAGCTTCTGTATTTTGATCGCTACACAAGATTGTTGGCTC
tgctgac putative branch site (score: 2)
cgtcttcc putative PPT
aaaaaaaacaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagctactttcttttctctctcggttagaacaaggtagagagaacttctaccttatacattcgtatcactgtatgttcttgttggtaaatgttgcctgccagcgtgtattgttttcacgaaagaagagagatgagggaaaaaaaacaatgctgacaattctgttgctctgcgtcttccagGTGAGGGTCAGCGAGTCGTATGGATTGAAATTTCCTCGCGAATTCGCTCTTCTGATGAAGCAGCTTCTGTATTTTGATCGCTACACAAGATTGTTGGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT