1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...attttaaattttgtagttttagttttataaccaccaagctcatcttactgaggcagctagcgaagatgaacgattgtaacacatgttgaatctcatgtagGCATGCTATTCAGTTGCTATCACCCGCCAGTGTAGTTGCAAAGGCTAATGGGAGAGAGAAGATCAGCAAG
species | Oryza sativa |
transcript | LOC_Os07g08170.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GAAGAAAGTCTCGCATTTTTAGGAGAGATTGGACAACAGACATCTTTGAG GCATGCTATTCAGTTGCTATCACCCGCCAGTGTAGTTGCAAAGGCTAATGGEST: gi|89168320|gb|CI109524.1|CI109524
genomic: GAAGAAAGTCTCGCATTTTTAGGAGAGATTGGACAACAGACATCTTTGAGgtacgattct ... tctcatgtagGCATGCTATTCAGTTGCTATCACCCGCCAGTGTAGTTGCAAAGGCTAATGG
EST: GAAGAAAGTCTCGCATTTTTAGGAGAGATTGGACAACAGGCATCTTTGAG GCATGCTATTCAGTTGCTATCACCCGCCAGTGTAGTTGCAAAGGCTAATGGEST: gi|86496777|gb|CI139410.1|CI139410
genomic: GAAGAAAGTCTCGCATTTTTAGGAGAGATTGGACAACAGACATCTTTGAGgtacgattct ... tctcatgtagGCATGCTATTCAGTTGCTATCACCCGCCAGTGTAGTTGCAAAGGCTAATGG
EST: GAAGAAAGTCTCGCATTTTTAGGAGAGATTGGACAACAGACATCTTTGAG GCATGCTATTCAGTTGCTATCACCCGCCAGTGTAGTTGCAAAGGCTAATGGEST: gi|88222413|gb|CI222369.1|CI222369
genomic: GAAGAAAGTCTCGCATTTTTAGGAGAGATTGGACAACAGACATCTTTGAGgtacgattct ... tctcatgtagGCATGCTATTCAGTTGCTATCACCCGCCAGTGTAGTTGCAAAGGCTAATGG
EST: GAAGAAAGTCTCGCATTTTTAGGAGAGATTGGACAACAGACATCTTTGAG GCATGCTATTCAGTTGCTATCACCCGCCAGTGTAGTTGCAAAGGCTAATGGEST: gi|86838938|gb|CI330353.1|CI330353
genomic: GAAGAAAGTCTCGCATTTTTAGGAGAGATTGGACAACAGACATCTTTGAGgtacgattct ... tctcatgtagGCATGCTATTCAGTTGCTATCACCCGCCAGTGTAGTTGCAAAGGCTAATGG
EST: AGAAAGTCTCGCATTTTTAGGAGAGATTTGACGACAGACATCTTTGAG GCATGCTATTCAGTTGCTATCACCCGCCAGTGTATTTGCAAAGGCTAATGGEST: gi|33807423|gb|CF329586.1|CF329586
genomic: AGAAAGTCTCGCATTTTTAGGAGAGATTGGACAACAGACATCTTTGAGgtacgattct ... tctcatgtagGCATGCTATTCAGTTGCTATCACCCGCCAGTGTAGTTGCAAAGGCTAATGG
EST: AGACATCTTTGAG GCATGCTATTCAGTTGCTATCACCCGCCAGTGTAGTTGCAAAGGCTAATGGEST: gi|4715602|gb|AU056718.1|AU056718
genomic: AGACATCTTTGAGgtacgattct ... tctcatgtagGCATGCTATTCAGTTGCTATCACCCGCCAGTGTAGTTGCAAAGGCTAATGG
EST: GAAGAAAGTCTCGCATTTTTAGGAGAGATTGGACAACAGACATCTTTGAG GCATGCTATTCAGTTGCTATCACCCGCCAGTGTAGTTGCAAAGGCTAATGGEST: gi|86487502|gb|CI130135.1|CI130135
genomic: GAAGAAAGTCTCGCATTTTTAGGAGAGATTGGACAACAGACATCTTTGAGgtacgattct ... tctcatgtagGCATGCTATTCAGTTGCTATCACCCGCCAGTGTAGTTGCAAAGGCTAATGG
EST: GAAGAAAGTCTCGCATTTTTAGGAGAGATTGGACAACAGACATCTTTGAG GCATGCTATTCAGTTGCTATCACCCGCCAGTGTAGTTGCAAAGGCTAATGG
genomic: GAAGAAAGTCTCGCATTTTTAGGAGAGATTGGACAACAGACATCTTTGAGgtacgattct ... tctcatgtagGCATGCTATTCAGTTGCTATCACCCGCCAGTGTAGTTGCAAAGGCTAATGG
tactgaggcagctagcgaagatgaacgattgtaacacatgttgaatctcatgtagGCATGCTATTCAGTTGCTATCACCCGCCAGTGTAGTTGCAAAGGCTAATGGGAGAGAGAAGATCAGCAAG
ttgtaac putative branch site (score: 1)
attgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attttaaattttgtagttttagttttataaccaccaagctcatcttactgaggcagctagcgaagatgaacgattgtaacacatgttgaatctcatgtagGCATGCTATTCAGTTGCTATCACCCGCCAGTGTAGTTGCAAAGGCTAATGGGAGAGAGAAGATCAGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - caagctc
- - - - - - - - - - - - - - - - - - - - - - - - - -ggcagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgttg