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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattgtctcgatttgcataacagtgccgtattaccaagatagcttatttacatgttggttctaaaagtacgatccccgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG

Basic information

species Oryza sativa
transcript LOC_Os06g49110.3
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g49110.3 (Oryza sativa), 3'ss of exon 10
lower sequence: Vv18s0001g02550.t01 (Vitis vinifera), 3'ss of exon 10
gtaattgtctcgatttgcataacagtgccgtattaccaagatagcttatttacatgttggttctaaaagtacgatccccgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG
      || | | ||| || |        | | |  | |  | ||  |  |     |   |||| ||  |||       |  |||||||| ||||||||  |||| ||||||||||||||  | || ||| |||| || ||  |||||||||| ||||||||||||
--gtcagtattggtttcca-actttgaatgcactcactaagtggcagaaatttccatca-ttctgaagttacttcaattgggtgacagGTGAAACCTGGTCTGCCTTACTTGGATGTCATAAGGCTGCTTCGGGATAACTCGTCATTGCCAATTGCTGCATATCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88835409|gb|CI005099.1|CI005099
EST:     GGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: GGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|88956575|gb|CI092792.1|CI092792
EST:     AGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTNAGGGACAAT
genomic: AGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29685228|gb|CB681503.1|CB681503
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|313079584|gb|HO213142.1|HO213142
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29645009|gb|CB650016.1|CB650016
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29619412|gb|CB624424.1|CB624424
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29624059|gb|CB629070.1|CB629070
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29624058|gb|CB629069.1|CB629069
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29645159|gb|CB650166.1|CB650166
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29661435|gb|CB657710.1|CB657710
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29617547|gb|CB622559.1|CB622559
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29629261|gb|CB634272.1|CB634272
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29624061|gb|CB629072.1|CB629072
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|86536175|gb|CI176381.1|CI176381
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29615587|gb|CB620599.1|CB620599
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29641825|gb|CB646832.1|CB646832
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|88245599|gb|CI245448.1|CI245448
EST:     AGAAGGAGCTGATATTCTTCTG                         GTAATACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACTAT
genomic: AGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29624057|gb|CB629068.1|CB629068
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|88247732|gb|CI247581.1|CI247581
EST:     GGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCCGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: GGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|86874617|gb|CI318176.1|CI318176
EST:     GGAGC-GATATTCTTCT-                         GTAAAACCTGGATTCCCATACGTTGGATGTCATCCGTCTTCTTAGGGACAA
genomic: GGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATAC-TTGGATGTCATCCGTCTTCTTAGGGACAA
EST: gi|29619109|gb|CB624121.1|CB624121
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTTTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29619316|gb|CB624328.1|CB624328
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|27577435|gb|CB000130.1|CB000130
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29660274|gb|CB656549.1|CB656549
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|38471437|gb|CF955568.1|CF955568
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|33680655|gb|CF308894.1|CF308894
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGNATGTCATCCGTCTTCTTAGGGACAA
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGG-ATGTCATCCGTCTTCTTAGGGACAA
EST: gi|29621570|gb|CB626581.1|CB626581
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29688150|gb|CB684425.1|CB684425
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|86870512|gb|CI320608.1|CI320608
EST:     AGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: AGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|15852419|gb|BI805215.1|BI805215
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|88907517|gb|CI090311.1|CI090311
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|25806864|gb|CA762825.1|CA762825
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|88974531|gb|CI022072.1|CI022072
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|58601365|gb|CK011893.1|CK011893
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|88226022|gb|CI225938.1|CI225938
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29666982|gb|CB663257.1|CB663257
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|27554454|gb|CA998354.1|CA998354
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|8528033|gb|AU092848.1|AU092848
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|88956530|gb|CI092762.1|CI092762
EST:     GCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: GCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29688149|gb|CB684424.1|CB684424
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29624056|gb|CB629067.1|CB629067
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|86251556|gb|CI016845.1|CI016845
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29616371|gb|CB621383.1|CB621383
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|86869618|gb|CI322104.1|CI322104
EST:     GATGAGCCAGAAGGAGCTGATATTCTTCT-                         GTAAAACCT-GATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: GATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|86434303|gb|CI094646.1|CI094646
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29660428|gb|CB656703.1|CB656703
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|88202644|gb|CI200999.1|CI200999
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|86493942|gb|CI136575.1|CI136575
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|396941280|gb|HO188489.1|HO188489
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29624060|gb|CB629071.1|CB629071
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29655803|gb|CB652078.1|CB652078
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29688151|gb|CB684426.1|CB684426
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29679003|gb|CB675278.1|CB675278
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29629260|gb|CB634271.1|CB634271
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29672091|gb|CB668366.1|CB668366
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
EST: gi|29613358|gb|CB618371.1|CB618371
EST:     CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTG                         GTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT
genomic: CGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGgtaattgtct ... cgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taccaagatagcttatttacatgttggttctaaaagtacgatccccgtttgacagGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG
                           ttctaaa  putative branch site (score: 2)
                                         tccccgttt  putative PPT
            ttatttacat  TA-rich tract