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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttccatgtaaattgtgcagaaacaattctgaaattatctttgtcaatttctgtattgtaatttataatctgatccatattattttatatgttgttatagAATGTCCTCGGAAACTGGAGCTCAAAGTTATTTGCAGTAGCCTTGTTGGCGTCTGGCCAGAGTTCTACAATTACAGGAACTTATGCGGGACAATATGTCA

Basic information

species Oryza sativa
transcript LOC_Os06g46310.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g46310.3 (Oryza sativa), 3'ss of exon 9
lower sequence: GRMZM2G069198_T03 (Zea mays), 3'ss of exon 10
---tttccatgtaaattgtgcagaaacaattctgaaattatctttgtcaatttctgtattgtaatttataatctgat-ccatattattttatatgttgttatagAATGTCCTCGGAAACTGGAGCTCAAAGTTATTTGCAGTAGCCTTGTTGGCGTCTGGCCAGAGTTCTACAATTACAGGAACTTATGCGGGACAATATGTCA
    |||    | | || ||   |||   || |       ||| | |  | || |   |    ||| | |||||||  |   ||| | ||   |||| || ||||||||||| |||||||||||||||||||| |||||||| || |||||||| ||||| ||||||||||||||||| || || ||||| |||||||||||||
gagcttctgcttcagttttg---aaatgttttttgtgaagtctatatatacttttcggtaaatattca-aatctgacactgcattttctttactgttcttttagAATGTCCTTGGAAACTGGAGCTCAAAGTTGTTTGCAGTTGCTTTGTTGGCATCTGGTCAGAGTTCTACAATTACGGGGACATATGCTGGACAATATGTCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttctgtattgtaatttataatctgatccatattattttatatgttgttatagAATGTCCTCGGAAACTGGAGCTCAAAGTTATTTGCAGTAGCCTTGTTGGCGTCTGGCCAGAGTTCTACAATTACAGGAACTTATGCGGGACAATATGTCA
                      atctgat  putative branch site (score: 4)
        tattgtaatttataat  TA-rich tract