1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gttatttcttctcgcggtgagtgggagagttcctcttttttcaagtttctcatgttcaaaccttttgctttgatattagGCTGTTGGAAAGGTCCTTCCAGCATTAAACGGGAAACTCACTGGTATGGCCTTCCGAGTTCCTACACCTAACGTCTCTGTAGTTGACTTGACATGCCGTC
species | Oryza sativa |
transcript | LOC_Os06g45590.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GCTAGTCAGAACATCATCCCTAGTTCTACTGGCGCAGCAAAG GCTGTTGGAAAGGTCCTTCCAGCATTAAACGGGAAACTCACTGGTATGGCCEST: gi|87014965|gb|CI271564.1|CI271564
genomic: GCTAGTCAGAACATCATCCCTAGTTCTACTGGCGCAGCAAAGgttatttctt ... ttgatattagGCTGTTGGAAAGGTCCTTCCAGCATTAAACGGGAAACTCACTGGTATGGCC
EST: GACGGGGTGCTAGTCAGAACATCATCCCTAGTTCTACTGGCGCAGCAAAG GCTGTTGGAAAGGTCCTTCCAGCATTAAACGGGAAACTCACTGGTATGGCCEST: gi|86597129|gb|CI272724.1|CI272724
genomic: GACGGGGTGCTAGTCAGAACATCATCCCTAGTTCTACTGGCGCAGCAAAGgttatttctt ... ttgatattagGCTGTTGGAAAGGTCCTTCCAGCATTAAACGGGAAACTCACTGGTATGGCC
EST: CTAGTTCTACTGGCGCAGCAAAG GCTGTTGGAAAGGTCCTTCCAGCATTAAACGGGAAACTCACTGGTATGGCCEST: gi|29641580|gb|CB646587.1|CB646587
genomic: CTAGTTCTACTGGCGCAGCAAAGgttatttctt ... ttgatattagGCTGTTGGAAAGGTCCTTCCAGCATTAAACGGGAAACTCACTGGTATGGCC
EST: GACGGGGTGCTAGTCAGAACATCATCCCTAGTTCTACTGGCGCAGCAAAG GCTGTTGGAAAGGTCCTTCCAGCATTAAACGGGAAACTCACTGGTATGGCCEST: gi|29641807|gb|CB646814.1|CB646814
genomic: GACGGGGTGCTAGTCAGAACATCATCCCTAGTTCTACTGGCGCAGCAAAGgttatttctt ... ttgatattagGCTGTTGGAAAGGTCCTTCCAGCATTAAACGGGAAACTCACTGGTATGGCC
EST: GACGGGGTGCTAGTCAGAACATCATCCCTAGTTCTACTGGCGCAGCAAAG GCTGTTGGAAAGGTCCTTCCAGCATTAAACGGGAAACTCACTGGTATGGCCEST: gi|29641535|gb|CB646542.1|CB646542
genomic: GACGGGGTGCTAGTCAGAACATCATCCCTAGTTCTACTGGCGCAGCAAAGgttatttctt ... ttgatattagGCTGTTGGAAAGGTCCTTCCAGCATTAAACGGGAAACTCACTGGTATGGCC
EST: GACGGGGTGCTAGTCAGAACATCATCCCTAGTTCTACTGGCGCAGCAAAG GCTGTTGGAAAGGTCCTTCCAGCATTAAACGGGAAACTCACTGGTATGGCC
genomic: GACGGGGTGCTAGTCAGAACATCATCCCTAGTTCTACTGGCGCAGCAAAGgttatttctt ... ttgatattagGCTGTTGGAAAGGTCCTTCCAGCATTAAACGGGAAACTCACTGGTATGGCC
gagagttcctcttttttcaagtttctcatgttcaaaccttttgctttgatattagGCTGTTGGAAAGGTCCTTCCAGCATTAAACGGGAAACTCACTGGTATGGCCTTCCGAGTTCCTACACCTAACGTCTCTGTAGTTGACTTGACATGCCGTC
ctttgat putative branch site (score: 15)
ccttttgcttt CT-rich tract
tttgatatta TA-rich tract