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gtattttcactattcctctctatttgataactgctagcattgcccatgggcattagccttttaaaatgactgaattctgtgcctttcctgactgaaaatatcttatgcagTACTCCAATTCTGAAGCTGTGGTTTATGTGGGCTGCGGGGAAAGAGGAAACGAGATGGCTGAGGTCCTTATGGACTTCCCACAATTGACAATGACATTGC
species | Oryza sativa |
transcript | LOC_Os06g45120.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTGGAGCATTTGGTTGTGGAAAAACTGTCATTAGTCAGGCACTTTCAAAG TACTCCAATTCTGAAGCTGTGGTTTATGTGGGCTGCGGGGAAAGAGGAAACEST: gi|58659487|gb|CK048167.1|CK048167
genomic: CTGGAGCATTTGGTTGTGGAAAAACTGTCATTAGTCAGGCACTTTCAAAGgtattttcac ... tcttatgcagTACTCCAATTCTGAAGCTGTGGTTTATGTGGGCTGCGGGGAAAGAGGAAAC
EST: CTGGAGCATTTGGTTGTGGAAAAGCGGTCATTAGTCAGGCACTTTCAAAG TACTCCAATTCTGAAGCTGTGGTTTATGTGGGCTGCGGGGAAAGAGGAAACEST: gi|427964|gb|D24110.1|D24110
genomic: CTGGAGCATTTGGTTGTGGAAAAACTGTCATTAGTCAGGCACTTTCAAAGgtattttcac ... tcttatgcagTACTCCAATTCTGAAGCTGTGGTTTATGTGGGCTGCGGGGAAAGAGGAAAC
EST: CTGGAGCATTTGGTTGTGGAAAAACTGTCATTAGTCAGGCACTTTCAAAG TACTCCAATTCTGAAGCTGTGGTTTATGTGGGCTGCGGGGAAAGAGGAAACEST: gi|27578142|gb|CB000837.1|CB000837
genomic: CTGGAGCATTTGGTTGTGGAAAAACTGTCATTAGTCAGGCACTTTCAAAGgtattttcac ... tcttatgcagTACTCCAATTCTGAAGCTGTGGTTTATGTGGGCTGCGGGGAAAGAGGAAAC
EST: AAACTGTCATTAGTCAGGCACTTTCAAAG TACTCCAATTCTGAAGCTGTGGTTTATGTGGGCTGCGGGGAAAGAGGAAACEST: gi|58594482|gb|CF992790.1|CF992790
genomic: AAACTGTCATTAGTCAGGCACTTTCAAAGgtattttcac ... tcttatgcagTACTCCAATTCTGAAGCTGTGGTTTATGTGGGCTGCGGGGAAAGAGGAAAC
EST: GGTTGTGGAAAAACTGTCATTAGTCAGGCACTTTCAAAG TACTCCAATTCTGAAGGTGGGGTTTATGTGGGCTGCGGGGAAAGAGGAAAC
genomic: GGTTGTGGAAAAACTGTCATTAGTCAGGCACTTTCAAAGgtattttcac ... tcttatgcagTACTCCAATTCTGAAGCTGTGGTTTATGTGGGCTGCGGGGAAAGAGGAAAC
gccttttaaaatgactgaattctgtgcctttcctgactgaaaatatcttatgcagTACTCCAATTCTGAAGCTGTGGTTTATGTGGGCTGCGGGGAAAGAGGAAACGAGATGGCTGAGGTCCTTATGGACTTCCCACAATTGACAATGACATTGC
tcctgac putative branch site (score: 2)
tgaaaatatcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattttcactattcctctctatttgataactgctagcattgcccatgggcattagccttttaaaatgactgaattctgtgcctttcctgactgaaaatatcttatgcagTACTCCAATTCTGAAGCTGTGGTTTATGTGGGCTGCGGGGAAAGAGGAAACGAGATGGCTGAGGTCCTTATGGACTTCCCACAATTGACAATGACATTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG