1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
gttagattccccgttttccgcagctgtatacaacagacgtccttttatatatcatgatgatggcctgatcctgctagttttccactaattaagcattttttttttgcagAAAGTGATAAATGGGTGCAAGGTGAATCATTGGGCTTGTATAAATTTCTCAAGGAGTGTGCAAGAAACTACTGCTCGGGGATTCTGCCAGGAGTTGGCAC
species | Oryza sativa |
transcript | LOC_Os06g39640.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GGAAAAGGAGTGCTTGCCCACAAGTTGGTCAGTGGAACATGGTGAACAAG AAAGTGATAAAATGGGTGCAAGGTGAATCATTGGGCTTGTATAAAATTTCTEST: gi|66920341|gb|CX107189.1|CX107189
genomic: GGAAAAGGAGTGCTTGCC-ACAAGTTGGTCAGTGGAACATGGTGAACAAGgttagattcc ... ttttttgcagAAAGTGATAAA-TGGGTGCAAGGTGAATCATTGGGCTTGTATAAA-TTTCT
EST: AGGAAAAGGAGTGCTTGCCACAAGTTGGTCAGTGGAACATGGTGAACAAG AAAGTGATAAATGGGTGCAAGGTGAATCATTGGGCTTGTATAAATTTCTCAEST: gi|58680597|gb|CK069284.1|CK069284
genomic: AGGAAAAGGAGTGCTTGCCACAAGTTGGTCAGTGGAACATGGTGAACAAGgttagattcc ... ttttttgcagAAAGTGATAAATGGGTGCAAGGTGAATCATTGGGCTTGTATAAATTTCTCA
EST: AGGAAAAGGAGTGCTTGCCACAAGTTGGTCAGTGGAACATGGTGAACAAG AAAGTGATAAATGGGTGCAAGGTGAATCATTGGGCTTGTATAAATTTCTCAEST: gi|58662235|gb|CK050915.1|CK050915
genomic: AGGAAAAGGAGTGCTTGCCACAAGTTGGTCAGTGGAACATGGTGAACAAGgttagattcc ... ttttttgcagAAAGTGATAAATGGGTGCAAGGTGAATCATTGGGCTTGTATAAATTTCTCA
EST: AGGAAAAGGAGTGCTTGCCACAAGTTGGTCAGTGGAACATGGTGAACAAG AAAGTGATAAATGGGTGCAAGGTGAATCATTGGGCTTGTATAAATTTCTCA
genomic: AGGAAAAGGAGTGCTTGCCACAAGTTGGTCAGTGGAACATGGTGAACAAGgttagattcc ... ttttttgcagAAAGTGATAAATGGGTGCAAGGTGAATCATTGGGCTTGTATAAATTTCTCA
tgatgatggcctgatcctgctagttttccactaattaagcattttttttttgcagAAAGTGATAAATGGGTGCAAGGTGAATCATTGGGCTTGTATAAATTTCTCAAGGAGTGTGCAAGAAACTACTGCTCGGGGATTCTGCCAGGAGTTGGCAC
cactaat putative branch site (score: 20)
cattttttttttgc putative PPT
actaattaagcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagattccccgttttccgcagctgtatacaacagacgtccttttatatatcatgatgatggcctgatcctgctagttttccactaattaagcattttttttttgcagAAAGTGATAAATGGGTGCAAGGTGAATCATTGGGCTTGTATAAATTTCTCAAGGAGTGTGCAAGAAACTACTGCTCGGGGATTCTGCCAGGAGTTGGCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA