1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gttcactaacgttatttaattctgccattctctttcataagctcttattctgtactttccctcaaatatgtatctattttcaccctaatgcaagatttccattcaactttgttgtttaattgttagtcattgatgaactgcttgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG
species | Oryza sativa |
transcript | LOC_Os06g33710.4 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAG GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAAEST: gi|29639075|gb|CB644084.1|CB644084
genomic: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAG GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAAEST: gi|88848995|gb|CI087517.1|CI087517
genomic: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAG GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAAEST: gi|8527728|gb|AU092543.1|AU092543
genomic: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAG GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAAEST: gi|29660328|gb|CB656603.1|CB656603
genomic: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAG GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAAEST: gi|29681268|gb|CB677543.1|CB677543
genomic: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAG GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAAEST: gi|86419330|gb|CI054131.1|CI054131
genomic: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAG GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAAEST: gi|29674258|gb|CB670533.1|CB670533
genomic: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAG GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAAEST: gi|9865343|gb|AU101093.1|AU101093
genomic: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAG GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAAEST: gi|29657895|gb|CB654170.1|CB654170
genomic: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAG GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAAEST: gi|29677613|gb|CB673888.1|CB673888
genomic: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAG GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAAEST: gi|86862613|gb|CI345627.1|CI345627
genomic: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAG GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAAEST: gi|86494920|gb|CI137553.1|CI137553
genomic: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAG GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAAEST: gi|29661774|gb|CB658049.1|CB658049
genomic: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAG GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAAEST: gi|29665561|gb|CB661836.1|CB661836
genomic: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAG GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAAEST: gi|86492595|gb|CI135228.1|CI135228
genomic: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAG GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
genomic: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
tccattcaactttgttgtttaattgttagtcattgatgaactgcttgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG
cattgat putative branch site (score: 69)
cttgctt putative PPT
tttgttgtttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcactaacgttatttaattctgccattctctttcataagctcttattctgtactttccctcaaatatgtatctattttcaccctaatgcaagatttccattcaactttgttgtttaattgttagtcattgatgaactgcttgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA