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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcactaacgttatttaattctgccattctctttcataagctcttattctgtactttccctcaaatatgtatctattttcaccctaatgcaagatttccattcaactttgttgtttaattgttagtcattgatgaactgcttgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG

Basic information

species Oryza sativa
transcript LOC_Os06g33710.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g33710.2 (Oryza sativa), 3'ss of exon 10
lower sequence: GRMZM2G047867_T01 (Zea mays), 3'ss of exon 10
gttcactaacgttatttaattctgccattctctttcataagctcttattctgtactttccctcaaatatgtatctattttcaccctaatgcaagatttccattcaactttgttgtttaattgttagtcattgatgaactgcttgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAATCACACAATACT---------TGTGCTGAAAAG
                                            | ||   ||||||    ||| |   || |    ||      |  |   |   |    | |     ||   |   |||  ||    ||       | |||| || | || | ||| ||||||||||||||||||||||||||||||| |||||||||||| || | |  |||         | ||||||||| 
--------------------------------------------taatggagtacttgtgatcatagtggtcttctgttgttttttggtttgaagatattgtgc----ctgacatcagatttcta----tttgaattttccttgtttcacagATCCATAGGGCTGCTTTTGTTCTGCCAACATTTGTAAGAAGAGAACTGGAAGCATATACCACTCCTATTAGTTCTGCTGAAAAC

upper sequence: LOC_Os06g33710.2 (Oryza sativa), 3'ss of exon 10
lower sequence: GRMZM2G047867_T02 (Zea mays), 3'ss of exon 10
gttcactaacgttatttaattctgccattctc--tttcataagctcttat-tctgtactttccctcaaatatgtatctattttcaccctaatgcaag-attt-ccattcaactttgttgtttaattgttagt-cattgatgaactg-----cttgcttaatagGT-TCAT--CGGG-----CTGCTTTTGTTC-TGCCAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG----------------------------
||    |   |||  ||| ||   | |||     | |  | ||   |||| ||  | | ||   |         || |||    |    | || ||  || | ||| ||   ||| || |  ||||| || | || || | | ||      ||   || ||| |  ||||  | ||     | |      |   || ||  |      | || | |  |    ||| ||||  |   |  |  |                               
gtgagtt---gtttgttagttactctattgatggtgtggttagtctttatgtccatgcattttgttctgccaacatttataagaagagaactggaaacatataccactccctttttttttgcaattgctactgcagtgctaacctttgcctctattttcatatgcatcatgacagGAGAAACCGAAAGAATCAGTGTCAGAACCGCAGAAGATAAAGATATTGTCAAACAACGCCATTCTTACAGCTTCCTAGCCCTGAGCCGTACTCAATCTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29660328|gb|CB656603.1|CB656603
EST:     TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAG                         GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
genomic: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: gi|29681268|gb|CB677543.1|CB677543
EST:     TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAG                         GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
genomic: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: gi|86864966|gb|CI344531.1|CI344531
EST:     TCAGATTTTACAATTCAGAG                         GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
genomic: TCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: gi|29681921|gb|CB678196.1|CB678196
EST:     TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAG                         GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
genomic: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: gi|2311358|gb|C27513.1|C27513
EST:     TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCANAG                         GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
genomic: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: gi|88848995|gb|CI087517.1|CI087517
EST:     TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAG                         GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
genomic: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: gi|88842302|gb|CI081558.1|CI081558
EST:     TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAG                         GTTTATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
genomic: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: gi|86822619|gb|CI358099.1|CI358099
EST:     TGGAAGGGAAATCAGATTTTACAATTCAGAG                         GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
genomic: TGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: gi|86862613|gb|CI345627.1|CI345627
EST:     TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAG                         GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
genomic: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: gi|86494920|gb|CI137553.1|CI137553
EST:     TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAG                         GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
genomic: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: gi|86869232|gb|CI338956.1|CI338956
EST:     GCTGGAAGGGAAATCAGATTTTACAATTCAGAG                         GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
genomic: GCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: gi|86883401|gb|CI338006.1|CI338006
EST:     TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAG                         GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
genomic: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: gi|86419330|gb|CI054131.1|CI054131
EST:     TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAG                         GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
genomic: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: gi|29639075|gb|CB644084.1|CB644084
EST:     TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAG                         GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
genomic: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: gi|86866996|gb|CI343835.1|CI343835
EST:     TGGAAGGAGCTATGGAAGCTGGAA-GGAAATCAGATTTTACAATTCAGAG                         GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
genomic: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: gi|86880669|gb|CI321070.1|CI321070
EST:     GAAGGAGCTATGTAAGGCTGTAAGGGAAATCAGATTTTTACAATTCAGAG                         GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
genomic: GAAGGAGCTATGGAA-GCTGGAAGGGAAATCAGA-TTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: gi|89190560|gb|CI392413.1|CI392413
EST:     TTACAATTCAGAG                         GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
genomic: TTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: gi|88259431|gb|CI363724.1|CI363724
EST:     GAAGGGAAATCAGATTTTACAATTCAGAG                         GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
genomic: GAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: gi|86880431|gb|CI320959.1|CI320959
EST:     TGGAA-GAGCTATGGAAGCTGGAA-GGAAATCAGATTTTACAATTCAGA-                         GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
genomic: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: gi|8527728|gb|AU092543.1|AU092543
EST:     TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAG                         GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
genomic: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: gi|86850841|gb|CI338817.1|CI338817
EST:     AATCAGATTTTACAATTCAGAG                         GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
genomic: AATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: gi|29665561|gb|CB661836.1|CB661836
EST:     TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAG                         GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
genomic: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: gi|88272390|gb|CI386245.1|CI386245
EST:     TTACAATTCAGAG                         GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
genomic: TTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: gi|86862323|gb|CI330207.1|CI330207
EST:     GGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAG                         GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACT-GAA
genomic: GGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: gi|29689098|gb|CB685373.1|CB685373
EST:     TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAG                         GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
genomic: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: gi|29677613|gb|CB673888.1|CB673888
EST:     TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAG                         GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
genomic: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: gi|86536849|gb|CI177055.1|CI177055
EST:     AAGGGAAATCAGA-TTTACAATTCAGAG                         GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
genomic: AAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: gi|86492595|gb|CI135228.1|CI135228
EST:     TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAG                         GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
genomic: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: gi|18386428|gb|BM419626.1|BM419626
EST:     TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAG                         GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
genomic: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: gi|86435914|gb|CI107147.1|CI107147
EST:     TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAG                         GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
genomic: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: gi|86890032|gb|CI320021.1|CI320021
EST:     T-GAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAG                         GTTCATCGGGCTGCTTTTGTTCTGCCAACATTT-TAAGGAGAGAACTGGAA
genomic: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: gi|88272401|gb|CI386256.1|CI386256
EST:     ACAATTCAGAG                         GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
genomic: ACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: gi|29661774|gb|CB658049.1|CB658049
EST:     TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAG                         GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
genomic: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: gi|29657895|gb|CB654170.1|CB654170
EST:     TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAG                         GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
genomic: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: gi|29674258|gb|CB670533.1|CB670533
EST:     TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAG                         GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
genomic: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: gi|88519646|gb|CI447300.1|CI447300
EST:     AATCAGATTTTACAATTCAGAG                         GTTCATCGGGCTGCTTTTGTTCTGCCCACATTTGTAAGGAGAGAACTGGAA
genomic: AATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: gi|86850849|gb|CI338825.1|CI338825
EST:     CTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAG                         GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
genomic: CTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: gi|88312408|gb|CI584931.1|CI584931
EST:     TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAG                         GTTCATCGGGCTGGTTTTGTTCTGGCAACATTTGTAAGGAGAGAACTGGAA
genomic: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: gi|86889883|gb|CI333534.1|CI333534
EST:     TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAG                         GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
genomic: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: gi|88828363|gb|CI000472.1|CI000472
EST:     TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAG                         GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
genomic: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: gi|88839842|gb|CI017607.1|CI017607
EST:     TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAG                         GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
genomic: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: gi|88839338|gb|CI000810.1|CI000810
EST:     TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAG                         GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
genomic: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: gi|9865343|gb|AU101093.1|AU101093
EST:     TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAG                         GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
genomic: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
EST: gi|86869884|gb|CI316612.1|CI316612
EST:     T-GAAGGAGCTAT-GAAGCT-GAAGGGAAATCAGATTTTACAATTCAGA-                         GTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA
genomic: TGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGgttcactaac ... tgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccattcaactttgttgtttaattgttagtcattgatgaactgcttgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG
                              cattgat  putative branch site (score: 4)
                                           cttgctt  putative PPT
          tttgttgtttaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttcactaacgttatttaattctgccattctctttcataagctcttattctgtactttccctcaaatatgtatctattttcaccctaatgcaagatttccattcaactttgttgtttaattgttagtcattgatgaactgcttgcttaatagGTTCATCGGGCTGCTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA