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gtatagaataataacttagtttcttacatttataagatagctgtcatgagacaactctttatgtatgcctttgtgatggtgaatagATGGACTTGCTCTGCTTGAGGGAGCGAGATTTACTGAAACGATTCACCACGGAGGTTTCTAACTATCTGGCACAAGGAGAAAACAGAGAGAAGGCTTTGA
species | Oryza sativa |
transcript | LOC_Os06g24704.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTATTCCTGATTATCTGACAAGTGGCACACTAAGAAGCTCCAGTTTCCAG ATGGACTTGCTCTGCTTGAGGGAGCGAGATTTACTGAAACGATTCACCACGEST: gi|29670228|gb|CB666503.1|CB666503
genomic: TTATTCCTGATTATCTGACAAGTGGCACACTAAGAAGCTCCAGTTTCCAGgtatagaata ... tggtgaatagATGGACTTGCTCTGCTTGAGGGAGCGAGATTTACTGAAACGATTCACCACG
EST: TTATTCCTGATTATCTGACAAGTGGCACACTAAGAAGCTCCAGTTTCCAG ATGGACTTGCTCTGCTTGAGGGAGCGAGATTTACTGAAACGATTCACCACGEST: gi|29670182|gb|CB666457.1|CB666457
genomic: TTATTCCTGATTATCTGACAAGTGGCACACTAAGAAGCTCCAGTTTCCAGgtatagaata ... tggtgaatagATGGACTTGCTCTGCTTGAGGGAGCGAGATTTACTGAAACGATTCACCACG
EST: GATTATCTGACAAGTGGCACACTAAGAAGCTCCAGTTTCCAG ATGGACTTGCTCTGCTTGAGGGAGCGAGATTTACTGAAACGATTCACCACGEST: gi|14571492|gb|BI118860.1|BI118860
genomic: GATTATCTGACAAGTGGCACACTAAGAAGCTCCAGTTTCCAGgtatagaata ... tggtgaatagATGGACTTGCTCTGCTTGAGGGAGCGAGATTTACTGAAACGATTCACCACG
EST: TTATTCCTGATTATCTGACAAGTGGCACACTAAGAAGCTCCAGTTTCCAG ATGGACTTGCTCTGCTTGAGGGAGCGAGATTTACTGAAACGATTCACCACGEST: gi|29665964|gb|CB662239.1|CB662239
genomic: TTATTCCTGATTATCTGACAAGTGGCACACTAAGAAGCTCCAGTTTCCAGgtatagaata ... tggtgaatagATGGACTTGCTCTGCTTGAGGGAGCGAGATTTACTGAAACGATTCACCACG
EST: TTATTCCTGATTATCTGACAAGTGGCACACTAAGAAGCTCCAGTTTCCAG ATGGACTTGCTCTGCTTGAGGGAGCGAGATTTACTGAAACGATTCACCACGEST: gi|29670227|gb|CB666502.1|CB666502
genomic: TTATTCCTGATTATCTGACAAGTGGCACACTAAGAAGCTCCAGTTTCCAGgtatagaata ... tggtgaatagATGGACTTGCTCTGCTTGAGGGAGCGAGATTTACTGAAACGATTCACCACG
EST: TTATTCCTGATTATCTGACAAGTGGCACACTAAGAAGCTCCAGTTTCCAG ATGGACTTGCTCTGCTTGAGGGAGCGAGATTTACTGAAACGATTCACCACGEST: gi|29665965|gb|CB662240.1|CB662240
genomic: TTATTCCTGATTATCTGACAAGTGGCACACTAAGAAGCTCCAGTTTCCAGgtatagaata ... tggtgaatagATGGACTTGCTCTGCTTGAGGGAGCGAGATTTACTGAAACGATTCACCACG
EST: TTATTCCTGATTATCTGACAAGTGGCACACTAAGAAGCTCCAGTTTCCAG ATGGACTTGCTCTGCTTGAGGGAGCGAGATTTACTGAAACGATTCACCACC
genomic: TTATTCCTGATTATCTGACAAGTGGCACACTAAGAAGCTCCAGTTTCCAGgtatagaata ... tggtgaatagATGGACTTGCTCTGCTTGAGGGAGCGAGATTTACTGAAACGATTCACCACG
ataagatagctgtcatgagacaactctttatgtatgcctttgtgatggtgaatagATGGACTTGCTCTGCTTGAGGGAGCGAGATTTACTGAAACGATTCACCACGGAGGTTTCTAACTATCTGGCACAAGGAGAAAACAGAGAGAAGGCTTTGA
tttatgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatagaataataacttagtttcttacatttataagatagctgtcatgagacaactctttatgtatgcctttgtgatggtgaatagATGGACTTGCTCTGCTTGAGGGAGCGAGATTTACTGAAACGATTCACCACGGAGGTTTCTAACTATCTGGCACAAGGAGAAAACAGAGAGAAGGCTTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA