1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatgaatcctcaccggcatgttcttttcctgtttttgcataattttacgtttaagaataacattcaacttggttctgcagCTAGGAAGATTGTATACTGCCTTAGGATGCCCACAGATGAACATCGAGTGAAGGTTGGAATCAGTTGGTTCACAAAGACTGCAGTTGATTCACTTGCCTC
species | Oryza sativa |
transcript | LOC_Os06g11140.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AGCAAGCTTTATTGAGGGCCTGACCTTGGAAGGACCTTTAGGGCATGCTG CTAGGAAGATTGTATACTGCCTTAGGATGCCCACAGATGAACATCGAGTGAEST: gi|27548695|gb|CA766603.2|CA766603
genomic: AGCAAGCTTTATTGAGGGCCTGACCTTGGAAGGACCTTTAGGGCATGCTGgtatgaatcc ... ggttctgcagCTAGGAAGATTGTATACTGCCTTAGGATGCCCACAGATGAACATCGAGTGA
EST: AGCAAGCTTTATTGAGGGCCTGACCTTGGAAGGACCTTTAGGGCATGCTG CTAGGAAGATTGTATACTGCCTTAGGATGCCCACAGATGAACATCGAGTGAEST: gi|88510401|gb|CI437907.1|CI437907
genomic: AGCAAGCTTTATTGAGGGCCTGACCTTGGAAGGACCTTTAGGGCATGCTGgtatgaatcc ... ggttctgcagCTAGGAAGATTGTATACTGCCTTAGGATGCCCACAGATGAACATCGAGTGA
EST: AGCAAGCTTTATTGAGGGCCTGACCTTGGAAGGACCTTTAGGGCATGCTG CTAGGAAGATTGTATACTGCCTTAGGATGCCCACAGATGAACATCGAGTGAEST: gi|87011459|gb|CI279368.1|CI279368
genomic: AGCAAGCTTTATTGAGGGCCTGACCTTGGAAGGACCTTTAGGGCATGCTGgtatgaatcc ... ggttctgcagCTAGGAAGATTGTATACTGCCTTAGGATGCCCACAGATGAACATCGAGTGA
EST: AGCAAGCTTTATTGAGGGCCTGACCTTGGAAGGACCTTTAGGGCATGCTG CTAGGAAGATTGTATACTGCCTTAGGATGCCCACAGATGAACATCGAGTGAEST: gi|89164909|gb|CI101997.1|CI101997
genomic: AGCAAGCTTTATTGAGGGCCTGACCTTGGAAGGACCTTTAGGGCATGCTGgtatgaatcc ... ggttctgcagCTAGGAAGATTGTATACTGCCTTAGGATGCCCACAGATGAACATCGAGTGA
EST: AGCAAGCTTTATTGAGGGCCTGACCTTGGAAGGACCTTTAGGGCATGCTG CTAGGAAGATTGTATACTGCCTTAGGATGCCCACAGATGAACATCGAGTGAEST: gi|86501587|gb|CI144220.1|CI144220
genomic: AGCAAGCTTTATTGAGGGCCTGACCTTGGAAGGACCTTTAGGGCATGCTGgtatgaatcc ... ggttctgcagCTAGGAAGATTGTATACTGCCTTAGGATGCCCACAGATGAACATCGAGTGA
EST: AGCAAGCTTTATTGAGGGCCTGACCTTGGAAGGACCTTTAGGGCATGCTG CTAGGAAGATTGTATACTGCCTTAGGATGCCCACAGATGAACATCGAGTGA
genomic: AGCAAGCTTTATTGAGGGCCTGACCTTGGAAGGACCTTTAGGGCATGCTGgtatgaatcc ... ggttctgcagCTAGGAAGATTGTATACTGCCTTAGGATGCCCACAGATGAACATCGAGTGA
ttcctgtttttgcataattttacgtttaagaataacattcaacttggttctgcagCTAGGAAGATTGTATACTGCCTTAGGATGCCCACAGATGAACATCGAGTGAAGGTTGGAATCAGTTGGTTCACAAAGACTGCAGTTGATTCACTTGCCTC
gaataac putative branch site (score: 2)
ataattttacgtttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgaatcctcaccggcatgttcttttcctgtttttgcataattttacgtttaagaataacattcaacttggttctgcagCTAGGAAGATTGTATACTGCCTTAGGATGCCCACAGATGAACATCGAGTGAAGGTTGGAATCAGTTGGTTCACAAAGACTGCAGTTGATTCACTTGCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG