1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...gacctctgatgttatatttgctcctatataccttttgtacagtgtctagattctgattagtcacgatgagctggtgattgcaatgttcttgtgttgttagGAATTCTGCAAGTCATGCAAAGGAAGGAAAGTTGTGCCAGGAACAAAAAACATCCGACTCAACATAGTGCCTG
species | Oryza sativa |
transcript | LOC_Os06g02620.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GGATGCAATCAACATGCACACAGTGTGGTGGTAATGGGAAGACTGTGAAG GAAT-CTGCCAGTCATGEST: gi|38477689|gb|CF961822.1|CF961822
genomic: GGATGCAATCAACATGCACACAGTGTGGTGGTAGTGGGAAGACTGTGAAGgtatgatgtc ... gtgttgttagGAATTCTGCAAGTCATG
EST: GGATGCAATC-ACATGCACACAGTGTGGTGGTAGTGGGAAGACTGTGAAG GAATTCTGCAAGTCATGCGAAGGAAGGAAAGTTGTGCCAGGAACAAAAAACEST: gi|58602124|gb|CK012652.1|CK012652
genomic: GGATGCAATCAACATGCACACAGTGTGGTGGTAGTGGGAAGACTGTGAAGgtatgatgtc ... gtgttgttagGAATTCTGCAAGTCATGCAAAGGAAGGAAAGTTGTGCCAGGAACAAAAAAC
EST: GGATGCAATCAACATGCACACAGTGTGGTGGTAGTGGGAAGACTGTGAAG GAATTCTGCAAGTCATGCAAAGGAAGGAAAGTTGTGCCAGGAACAAAAAACEST: gi|13807365|gb|AU181927.1|AU181927
genomic: GGATGCAATCAACATGCACACAGTGTGGTGGTAGTGGGAAGACTGTGAAGgtatgatgtc ... gtgttgttagGAATTCTGCAAGTCATGCAAAGGAAGGAAAGTTGTGCCAGGAACAAAAAAC
EST: GGATGCAATCAACATGCACACAGTGTGGTGGTAGTGGGAAGACTGTGAAG GAATTCTGCAAGTCATGCAAAGGAAGGAAAEST: gi|58654377|gb|CK043057.1|CK043057
genomic: GGATGCAATCAACATGCACACAGTGTGGTGGTAGTGGGAAGACTGTGAAGgtatgatgtc ... gtgttgttagGAATTCTGCAAGTCATGCAAAGGAAGGAAA
EST: GGATGCAATCAACATGCACACAGTGTGGTGGTAGTGGGAAGACTGTGAAG GAATTCTGCAAGTCATGCAAAGGAAGGAAAGTTGTGCCAGGAACAAAAAACEST: gi|58598364|gb|CK008892.1|CK008892
genomic: GGATGCAATCAACATGCACACAGTGTGGTGGTAGTGGGAAGACTGTGAAGgtatgatgtc ... gtgttgttagGAATTCTGCAAGTCATGCAAAGGAAGGAAAGTTGTGCCAGGAACAAAAAAC
EST: GGATGCAATCAACATGCACACAGTGTGGTGGTAGTGGGAAGACTGTGAAG GAATTCTGCAAGTCATGCAAAGGAAGGAAAGTTGTGCCAGGAACAAAAAACEST: gi|4879034|gb|AU063333.1|AU063333
genomic: GGATGCAATCAACATGCACACAGTGTGGTGGTAGTGGGAAGACTGTGAAGgtatgatgtc ... gtgttgttagGAATTCTGCAAGTCATGCAAAGGAAGGAAAGTTGTGCCAGGAACAAAAAAC
EST: GGATGCAATCAACATGCACACAGTGTGGTGGTAGTGGGAAGACTGTGAAG GAATTCTGCAAGTCATGCAAAGGAAGGAAAGTTGTGCCAGGA-CAAAAACC
genomic: GGATGCAATCAACATGCACACAGTGTGGTGGTAGTGGGAAGACTGTGAAGgtatgatgtc ... gtgttgttagGAATTCTGCAAGTCATGCAAAGGAAGGAAAGTTGTGCCAGGAACAAAAAAC
ctagattctgattagtcacgatgagctggtgattgcaatgttcttgtgttgttagGAATTCTGCAAGTCATGCAAAGGAAGGAAAGTTGTGCCAGGAACAAAAAACATCCGACTCAACATAGTGCCTG
ttctgat putative branch site (score: 20)
ttcttgt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gacctctgatgttatatttgctcctatataccttttgtacagtgtctagattctgattagtcacgatgagctggtgattgcaatgttcttgtgttgttagGAATTCTGCAAGTCATGCAAAGGAAGGAAAGTTGTGCCAGGAACAAAAAACATCCGACTCAACATAGTGCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - -ctgatgt
- - - - - - - - -ttgctcc
- - - - - - - - - - - - - - - -cttttgt
- - - - - - - - - - - - - - - - - - - - - - - - gattctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctggtg