1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtgagtgaagaatatttgtgcctttatgagataactatttgctctcaattacaatatgtttatttgcttatccccccgttccagATATGTGGGCGATGGGTGCCATCATCGCGGAGCTTTTTTCACTGCGACCTCTTTTCCCTGGTTCAAA
species | Oryza sativa |
transcript | LOC_Os06g02550.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CCGTGCCCCTGAAGTTCTGCTCCAAGCTTCTGTTTACAACTCAGCAGTTG AATATGTGGGCGATGGGTGCCATCATCGCGGAGCTTTTTTCEST: gi|58655521|gb|CK044201.1|CK044201
genomic: CCGTGCCCCTGAAGTTCTGCTCCAAGCTTCTGTTTACAACTCAGCAGTTGgtgagtgaag ... cccgttccagA-TATGTGGGCGATGGGTGCCATCATCGCGGAGCTTTTTTC
EST: CCGTGCCCCTGAAGTTCTGCTCCAAGCTTCTGTTTACAACTCAGCAGTTG ATATGTGGGCGATGGGTGCCATCATCGCGGAEST: gi|58662294|gb|CK050974.1|CK050974
genomic: CCGTGCCCCTGAAGTTCTGCTCCAAGCTTCTGTTTACAACTCAGCAGTTGgtgagtgaag ... cccgttccagATATGTGGGCGATGGGTGCCATCATCGCGGA
EST: CCGTGCCCCTGAAGTTCTGCTCCAAGCTTCTGTTTACAACTCAGCAGTTG ATATGTGGGCGATGGGTGCCATCATCGCGGAGCTTTTTTCACTGCGACCTCEST: gi|29641486|gb|CB646493.1|CB646493
genomic: CCGTGCCCCTGAAGTTCTGCTCCAAGCTTCTGTTTACAACTCAGCAGTTGgtgagtgaag ... cccgttccagATATGTGGGCGATGGGTGCCATCATCGCGGAGCTTTTTTCACTGCGACCTC
EST: CCGTGCCCCTGAAGTTCTGCTCCAAGCTTCTGTTTACAACTCAGCAGTTG ATATGTGGGCGATGGGTGCCATCATCGCGGAGCTTTTTTCACTGCGACCTCEST: gi|58687727|gb|CK076414.1|CK076414
genomic: CCGTGCCCCTGAAGTTCTGCTCCAAGCTTCTGTTTACAACTCAGCAGTTGgtgagtgaag ... cccgttccagATATGTGGGCGATGGGTGCCATCATCGCGGAGCTTTTTTCACTGCGACCTC
EST: CCGTGCCCCTGAAGTTCTGCTCCAAGCTTCTGTTTACAACTCAGCAGTTG ATATGTGGGCGATGGGTGCCATCATCGCGGAGCTTTTTTCACTGCGACCTCEST: gi|58677581|gb|CK066268.1|CK066268
genomic: CCGTGCCCCTGAAGTTCTGCTCCAAGCTTCTGTTTACAACTCAGCAGTTGgtgagtgaag ... cccgttccagATATGTGGGCGATGGGTGCCATCATCGCGGAGCTTTTTTCACTGCGACCTC
EST: CCGTGCCCCTGAAGTTCTGCTCCAAGCTTCTGTTTACAACTCAGCAGTTG ATATGTGGGCGATGGGTGCCATCATCGCGGAGCTTTTTTCACTGCGACCTCEST: gi|58657844|gb|CK046524.1|CK046524
genomic: CCGTGCCCCTGAAGTTCTGCTCCAAGCTTCTGTTTACAACTCAGCAGTTGgtgagtgaag ... cccgttccagATATGTGGGCGATGGGTGCCATCATCGCGGAGCTTTTTTCACTGCGACCTC
EST: CCGTGCCCCTGAAGTTCTGCTCCAAGCTTCTGTTTACAACTCAGCAGTTG ATATGTGGGCGATGGGTGCCATCATCGCGGAGCTTTTTTCACTGCGANCTCEST: gi|29658028|gb|CB654303.1|CB654303
genomic: CCGTGCCCCTGAAGTTCTGCTCCAAGCTTCTGTTTACAACTCAGCAGTTGgtgagtgaag ... cccgttccagATATGTGGGCGATGGGTGCCATCATCGCGGAGCTTTTTTCACTGCGACCTC
EST: CCGTGCCCCTGAAGTTCTGCTCCAAGCTTCTGTTTACAACTCAGCAGTTG ATATGTGGGCGATGGGTGCCCTCATCGCCGAGCTTTTTTCACTGCGACCTCEST: gi|58685041|gb|CK073728.1|CK073728
genomic: CCGTGCCCCTGAAGTTCTGCTCCAAGCTTCTGTTTACAACTCAGCAGTTGgtgagtgaag ... cccgttccagATATGTGGGCGATGGGTGCCATCATCGCGGAGCTTTTTTCACTGCGACCTC
EST: CCGTGCCCCTGAAGTTCTGCTCCAAGCTTCTGTTTACAACTCAGCAGTTG ATATGTGGGCGATGGGTGCCATCATCGCGGAGCTTTTTTCACTGCGACCTCEST: gi|29685601|gb|CB681876.1|CB681876
genomic: CCGTGCCCCTGAAGTTCTGCTCCAAGCTTCTGTTTACAACTCAGCAGTTGgtgagtgaag ... cccgttccagATATGTGGGCGATGGGTGCCATCATCGCGGAGCTTTTTTCACTGCGACCTC
EST: CCGTGCCCCTGAAGTTCTGCTCCAAGCTTCTGTTTACAACTCAGCAGTTG ATATGTGGGCGATGGGTGCCATCATCGCGGAGCTTTTTTCACTGCGACCTCEST: gi|58689016|gb|CK077703.1|CK077703
genomic: CCGTGCCCCTGAAGTTCTGCTCCAAGCTTCTGTTTACAACTCAGCAGTTGgtgagtgaag ... cccgttccagATATGTGGGCGATGGGTGCCATCATCGCGGAGCTTTTTTCACTGCGACCTC
EST: CCGTGCCCCTGAAGTTCTGCTCCAAGCTTCTGTTTACAACTCAGCAGTTG ATATGTGGGCGATGGGTGCCATCATCGCGGAGCTTTTTTCACTGCGACCTC
genomic: CCGTGCCCCTGAAGTTCTGCTCCAAGCTTCTGTTTACAACTCAGCAGTTGgtgagtgaag ... cccgttccagATATGTGGGCGATGGGTGCCATCATCGCGGAGCTTTTTTCACTGCGACCTC
gataactatttgctctcaattacaatatgtttatttgcttatccccccgttccagATATGTGGGCGATGGGTGCCATCATCGCGGAGCTTTTTTCACTGCGACCTCTTTTCCCTGGTTCAAA
agataac putative branch site (score: 84)
cttatccccccgttcc putative PPT
tcaattacaatatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgaagaatatttgtgcctttatgagataactatttgctctcaattacaatatgtttatttgcttatccccccgttccagATATGTGGGCGATGGGTGCCATCATCGCGGAGCTTTTTTCACTGCGACCTCTTTTCCCTGGTTCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT