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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttaatctacatatgattcctaattttgcgatattaattttatgatttagttgtgtatatagtgttttggtatgcttacttggttgcacatttctttgaagATAATAAATGTCTACAATCAACAATACGAGAGTGGTGCACAGTTTTGGCCGAGTGTGCACGGGCGCATAATCATTGCATTGATCGTATCACAGCTACTTC

Basic information

species Oryza sativa
transcript LOC_Os05g51630.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g51630.1 (Oryza sativa), 3'ss of exon 10
lower sequence: GRMZM2G456000_T03 (Zea mays), 3'ss of exon 10
ttaatctacatatgattcctaattttgcgatattaattttatgatttagttgtgtatatagtgttttggtatgcttacttggttgcacatttctttgaagATAATAAATGTCTACAATCAACAATACGAGAGTGGTGCACAGTTTTGGCCGAGTGTGCACGGGCGCATAATCATTGCATTGATCGTATCACAGCTACTTC
                     |     ||  |    | ||  || ||    |  | |  |      || | ||  | ||||  |||   | |  ||  |||||||||||||||| ||||| ||||| ||||| |  |||||||| ||||| || || || ||||| |||||||  || ||||| ||||| || || || |
-------------------gtacggaacggaacctctcttgagagtttaggggatgtcaaacccactgatctgagt-cttgtctgcttgtgttgtt--agATAATAAATGTCTATAATCAGCAATATGAGAGCGCCGCACAGTTCTGGCCTAGCGTTCATGGGCGTATAATCACAGCGTTGATTGTATCGCAACTGCTGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29666920|gb|CB663195.1|CB663195
EST:     CTTTCATATTGGTATTCTTCGGGCTGGCATATGTTGTCTACCGCCACCAG                         ATAATAAATGTCTACAATCAACAATACGAGAGTGGTGCACAGTTTTGGCCG
genomic: CTTTCATATTGGTATTCTTCGGGCTGGCATATGTTGTCTACCGCCACCAGgtaaggacca ... ttctttgaagATAATAAATGTCTACAATCAACAATACGAGAGTGGTGCACAGTTTTGGCCG
EST: gi|218481681|gb|FG962994.1|FG962994
EST:     CTTTCATATTGGTATTCTTCGGGCTGGCATATGTTGTCTACCGCCACCAG                         ATAATAAATGTCTACAATCAACAATACGAGAGTGGTGCACAGTTTTGGCCG
genomic: CTTTCATATTGGTATTCTTCGGGCTGGCATATGTTGTCTACCGCCACCAGgtaaggacca ... ttctttgaagATAATAAATGTCTACAATCAACAATACGAGAGTGGTGCACAGTTTTGGCCG
EST: gi|29666876|gb|CB663151.1|CB663151
EST:     CTTTCATATTGGTATTCTTCGGGCTGGCATATGTTGTCTACCGCCACCAG                         ATAATAAATGTCTACAATCAACAATACGAGAGTGGTGCACAGTTTTGGCCG
genomic: CTTTCATATTGGTATTCTTCGGGCTGGCATATGTTGTCTACCGCCACCAGgtaaggacca ... ttctttgaagATAATAAATGTCTACAATCAACAATACGAGAGTGGTGCACAGTTTTGGCCG
EST: gi|29627769|gb|CB632780.1|CB632780
EST:     CTTTCATATTGGTATTCTTCGGGCTGGCATATGTTGTCTACCGCCACCAG                         ATAATAAATGTCTACAATCAACAATACGAGAGTGGTGCACAGTTTTGGCCG
genomic: CTTTCATATTGGTATTCTTCGGGCTGGCATATGTTGTCTACCGCCACCAGgtaaggacca ... ttctttgaagATAATAAATGTCTACAATCAACAATACGAGAGTGGTGCACAGTTTTGGCCG
EST: gi|58686140|gb|CK074827.1|CK074827
EST:     CTTTCATATTGGTATTCTTCGGGCTGGCATATGTTGTCTACCGCCACCAG                         ATAATAAATGTCTACAATCAACAATACGAGAGTGGTGCACAGTTTTGGCCG
genomic: CTTTCATATTGGTATTCTTCGGGCTGGCATATGTTGTCTACCGCCACCAGgtaaggacca ... ttctttgaagATAATAAATGTCTACAATCAACAATACGAGAGTGGTGCACAGTTTTGGCCG
EST: gi|218492846|gb|FG945413.1|FG945413
EST:     CTTTCATATTGGTATTCTTCGGGCTGGCATATGTTGTCTACCGCCACCAG                         ATAATAAATGTCTACAATCAACAATACGAGAGTGGTGCACAGTTTTGGCCG
genomic: CTTTCATATTGGTATTCTTCGGGCTGGCATATGTTGTCTACCGCCACCAGgtaaggacca ... ttctttgaagATAATAAATGTCTACAATCAACAATACGAGAGTGGTGCACAGTTTTGGCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagttgtgtatatagtgttttggtatgcttacttggttgcacatttctttgaagATAATAAATGTCTACAATCAACAATACGAGAGTGGTGCACAGTTTTGGCCGAGTGTGCACGGGCGCATAATCATTGCATTGATCGTATCACAGCTACTTC
                          tgcttac  putative branch site (score: 2)
                                          catttcttt  putative PPT
       tgtatata  TA-rich tract