1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaattcagcgtttgagtttgtgttcattgcattgttagtcacaacatgcacctgcttttgtcattaattgagcctctgaattgcagTATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAG
species | Oryza sativa |
transcript | LOC_Os05g51530.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAG TATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGEST: gi|88762888|gb|CI772444.1|CI772444
genomic: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAGgtaattcagc ... tgaattgcagTATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGG
EST: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAG TATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGEST: gi|25802832|gb|CA758793.1|CA758793
genomic: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAGgtaattcagc ... tgaattgcagTATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGG
EST: GAANAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAG TATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGG
genomic: GAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCAATGTCCATAGgtaattcagc ... tgaattgcagTATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGG
ttgttagtcacaacatgcacctgcttttgtcattaattgagcctctgaattgcagTATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAG
cattaat putative branch site (score: 65)
cctct putative PPT
ttttgtcattaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattcagcgtttgagtttgtgttcattgcattgttagtcacaacatgcacctgcttttgtcattaattgagcctctgaattgcagTATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA