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...catgatgctcctatcacaatattttactttaataccacaaaaatggcagtagcttagaactttgttaagcatgatatcttacaaaattcttcctatacagGTCTTACGAATAGTAATCTAGCAACATTTGGTCTGGGGGTTGTTCAG
species | Oryza sativa |
transcript | LOC_Os05g50280.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGGTGTGAATGGCATTCTATTTTATGCTGCTAGTATCTTCAAAGCCGCCG GTCTTACGAATAGTAATCTAGCAACATTTGGTCTGGGGGTTGTTCAGEST: gi|29678789|gb|CB675064.1|CB675064
genomic: TGGTGTGAATGGCATTCTATTTTATGCTGCTAGTATCTTCAAAGCCGCCGgtatgttctg ... tcctatacagGTCTTACGAATAGTAATCTAGCAACATTTGGTCTGGGGGTTGTTCAG
EST: TGGTGTGAATGGCATTCTATTTTATGCTGCTAGTATCTTCAAAGCCGCCG GTCTTACGAATAGTAATCTAGCAACATTTGGTCTGGGGGTTGTTCAGEST: gi|218482029|gb|FG948463.1|FG948463
genomic: TGGTGTGAATGGCATTCTATTTTATGCTGCTAGTATCTTCAAAGCCGCCGgtatgttctg ... tcctatacagGTCTTACGAATAGTAATCTAGCAACATTTGGTCTGGGGGTTGTTCAG
EST: TGGTGTGAATGGCATTCTATGTTATGCTGCTAGTATCTTCAAAGCCGCCG GTCTTACGAATAGTAATCTAGCAACATTTGGTCTGGGGGTTGTTCAGEST: gi|701858|gb|D48149.1|D48149
genomic: TGGTGTGAATGGCATTCTATTTTATGCTGCTAGTATCTTCAAAGCCGCCGgtatgttctg ... tcctatacagGTCTTACGAATAGTAATCTAGCAACATTTGGTCTGGGGGTTGTTCAG
EST: TGGTGTGAATGGCATTCTATTTTATGCTGCTAGTATCTTCAAAGCCGCCG GTCTTACGAATAGTAATCTAGCAACATTTGGTCTGGGGGTTGTTCAG
genomic: TGGTGTGAATGGCATTCTATTTTATGCTGCTAGTATCTTCAAAGCCGCCGgtatgttctg ... tcctatacagGTCTTACGAATAGTAATCTAGCAACATTTGGTCTGGGGGTTGTTCAG
gcagtagcttagaactttgttaagcatgatatcttacaaaattcttcctatacagGTCTTACGAATAGTAATCTAGCAACATTTGGTCTGGGGGTTGTTCAG
atcttac putative branch site (score: 23)
ttcttcctat putative PPT
atatcttacaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgatgctcctatcacaatattttactttaataccacaaaaatggcagtagcttagaactttgttaagcatgatatcttacaaaattcttcctatacagGTCTTACGAATAGTAATCTAGCAACATTTGGTCTGGGGGTTGTTCAG
- tgatgct
- - - - - - - cacaata
- - - - - - - - - - - - - - - - - ccacaaa
- - - - - - - - - - - - - - - - - - - - - - - cagtagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacaaaa