1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...ggacctctaataggtttatgcatatgtaatttccttcgtctctctgtatcatagtcatattttagccgatttggcttcgtgacacgcaaaatttcttcagGTCTCACAAACAGTGACTTGGCTACATGTGCACTTGGTGCTATCCAG
species | Oryza sativa |
transcript | LOC_Os05g49270.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGGAATCACCGGAATATTGTTTTATGCAGGTAGCATCTTCCAAGCAGCAG GTCTCACAAACAGTGACTTGGGTACATGTGCACTGGGGG-TATCCAGEST: gi|29687040|gb|CB683315.1|CB683315
genomic: TGGAATCAATGGAATATTGTTTTATGCAGGTAGCATCTTCAAAGCAGCAGgtaagttgtg ... atttcttcagGTCTCACAAACAGTGACTTGGCTACATGTGCACTTGGTGCTATCCAG
EST: TGGAATCAATGGAATATTGTTTTATGCAGGTAGCATCTTCAAAGCAGCAG GTCTCACAAACAGTGACTTGGCTACATGTGCACTTGGTGCTATCCAG
genomic: TGGAATCAATGGAATATTGTTTTATGCAGGTAGCATCTTCAAAGCAGCAGgtaagttgtg ... atttcttcagGTCTCACAAACAGTGACTTGGCTACATGTGCACTTGGTGCTATCCAG
gtatcatagtcatattttagccgatttggcttcgtgacacgcaaaatttcttcagGTCTCACAAACAGTGACTTGGCTACATGTGCACTTGGTGCTATCCAG
tttcttc CT-rich tract
atagtcatatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggacctctaataggtttatgcatatgtaatttccttcgtctctctgtatcatagtcatattttagccgatttggcttcgtgacacgcaaaatttcttcagGTCTCACAAACAGTGACTTGGCTACATGTGCACTTGGTGCTATCCAG
- - - - - - - -ttatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttcgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacgcaa