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...ccatggaaggatctttgggttactgcagcattcttgtaatgatgcagcatttctgactatgtagctattgctaataggtaatctcattttgctatttcagTCAAAATTGGCAGCACATGGATTTACATCTGCTTCCCCTTCCATTATTGAAGAAAGCATTCCTGTTGTTGACAAGGTTGTGGATGATGGATGGGGCAGTC
species | Oryza sativa |
transcript | LOC_Os05g46720.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CATCAAGGAACCTGATAACAAATCCCCTTTTGACCCCTGTTCATGAGGAG TCAAAATTGGCAGCACATGGATTTACATCTGCTTCCCCTTCCATTATTGAAEST: gi|2443121|gb|C74892.1|C74892
genomic: CATCAAGGAACCTGATAACAAATCCCCTTTTGACCCCTGTTCATGAGGAGgcaagttgcc ... gctatttcagTCAAAATTGGCAGCACATGGATTTACATCTGCTTCCCCTTCCATTATTGAA
EST: CATCAAGGAACCTGATAACAAATCCCCTTTTGACCCCTGTTCATNAGGAG TCAAAATTGGCAGCACATGGATTTACATCTGCTTCCCCTTCCATTTATTGAEST: gi|3766939|gb|AU031049.1|AU031049
genomic: CATCAAGGAACCTGATAACAAATCCCCTTTTGACCCCTGTTCATGAGGAGgcaagttgcc ... gctatttcagTCAAAATTGGCAGCACATGGATTTACATCTGCTTCCCCTTCCATT-ATTGA
EST: CATCAAGGAACCTGATAACAAATCCCCTTTTGACCCCTGTTCATGAGGAG TCAAAATTGGCAGCACATGGATTTACATCTGCTTCCCCTTCCATTATTGAA
genomic: CATCAAGGAACCTGATAACAAATCCCCTTTTGACCCCTGTTCATGAGGAGgcaagttgcc ... gctatttcagTCAAAATTGGCAGCACATGGATTTACATCTGCTTCCCCTTCCATTATTGAA
agcatttctgactatgtagctattgctaataggtaatctcattttgctatttcagTCAAAATTGGCAGCACATGGATTTACATCTGCTTCCCCTTCCATTATTGAAGAAAGCATTCCTGTTGTTGACAAGGTTGTGGATGATGGATGGGGCAGTC
tgctaat putative branch site (score: 2)
ttttgct putative PPT
tcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccatggaaggatctttgggttactgcagcattcttgtaatgatgcagcatttctgactatgtagctattgctaataggtaatctcattttgctatttcagTCAAAATTGGCAGCACATGGATTTACATCTGCTTCCCCTTCCATTATTGAAGAAAGCATTCCTGTTGTTGACAAGGTTGTGGATGATGGATGGGGCAGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
ccatgga
- - - - - - - - - - - ctgcagc
- - - - - - - - - - - - - - -attcttg
- - - - - - - - - - - - - - - - - - - -tgatgca
- - - - - - - - - - - - - - - - - - - - - - - - -tttctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctaat