1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...aatacaatttgtctttcttttttatttgagctttggaagctagttgagcttgtgttacttttcatatcttaatctgttgtttaattttcttaacttgcagAATTGGTCGTCTAGTGGGCTTCTTGATAAAATGAAAAGTCTTTCTGAAAGAAGGAAGCTTGAAGACTTGACCATTGGCCCAGTCCTTACT
species | Oryza sativa |
transcript | LOC_Os05g45960.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATTCATGCACAAG AATTGGTCGTCTAGTGGGCTTCTTGATAAAATGAAAAGTCTTTCTGAAAGAEST: gi|218484591|gb|FG954366.1|FG954366
genomic: ATTCATGCACAAGgtaatagtga ... taacttgcagAATTGGTCGTCTAGTGGGCTTCTTGATAAAATGAAAAGTCTTTCTGAAAGA
EST: GCAGTGGTCAGAAGTGCTCTGCTCAGTCTATTCTATTCATGCACAAG AATTGGTCGTCTAGTGGGCTTCTTGATAAAATGAAAAGTCTTTCTGAAAGAEST: gi|58676256|gb|CK064943.1|CK064943
genomic: GCAGTGGTCAGAAGTGCTCTGCTCAGTCTATTCTATTCATGCACAAGgtaatagtga ... taacttgcagAATTGGTCGTCTAGTGGGCTTCTTGATAAAATGAAAAGTCTTTCTGAAAGA
EST: CTTGCAGTGGTCAGAAGTGCTCTGCTCAGTCTATTCTATTCATGCACAAG AATTGGTCGTCTAGTGGGCTTCTTG
genomic: CTTGCAGTGGTCAGAAGTGCTCTGCTCAGTCTATTCTATTCATGCACAAGgtaatagtga ... taacttgcagAATTGGTCGTCTAGTGGGCTTCTTG
gagcttgtgttacttttcatatcttaatctgttgtttaattttcttaacttgcagAATTGGTCGTCTAGTGGGCTTCTTGATAAAATGAAAAGTCTTTCTGAAAGAAGGAAGCTTGAAGACTTGACCATTGGCCCAGTCCTTACT
tcttaac putative branch site (score: 29)
ttttctt CT-rich tract
ttgtttaattttctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatacaatttgtctttcttttttatttgagctttggaagctagttgagcttgtgttacttttcatatcttaatctgttgtttaattttcttaacttgcagAATTGGTCGTCTAGTGGGCTTCTTGATAAAATGAAAAGTCTTTCTGAAAGAAGGAAGCTTGAAGACTTGACCATTGGCCCAGTCCTTACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - -gcttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgttgt