1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...accaccacatgcatctttctggctggcttagtcagcctatgaaagccatatactggattcacatatcttataatacctcctaactattttcacttggcagATATTTTACTTTGTCGGGTTTGGATTATTCTGCCTTGAGTCACTGCTGAGCATTGGTGTCATTCAG
species | Oryza sativa |
transcript | LOC_Os05g42330.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CATAGGCAGGAGTGCTATAGTGGGG ATATTTTACTTTGTCGGGTTTGGATTATTCTGCCTTGAGTCACTGCTGAGCEST: gi|88964067|gb|CI032984.1|CI032984
genomic: CATAGGCAGGAGTGCTATAGTGGGGgtaagtatct ... cacttggcagATATTTTACTTTGTCGGGTTTGGATTATTCTGCCTTGAGTCACTGCTGAGC
EST: CATAGGCAGGAGTGCTATAGTGGGG ATATTTTACTTTGTCGGGTTTGGATTATTCTGCCTTGAGTCACTGCTGAGCEST: gi|33803682|gb|CF327716.1|CF327716
genomic: CATAGGCAGGAGTGCTATAGTGGGGgtaagtatct ... cacttggcagATATTTTACTTTGTCGGGTTTGGATTATTCTGCCTTGAGTCACTGCTGAGC
EST: TGGGATTTTGCCTGCCATTGATGTCATAGGCAGGAGTGCTATAGTGGGG ATATTTTACTTTGTCGGGTTTGGATTATTCTGCCTTGAGTCACTGCTGAGCEST: gi|89188347|gb|CI115596.1|CI115596
genomic: TGGGATTTTGCCTGCCATTGATGTCATAGGCAGGAGTGCTATAGTGGGGgtaagtatct ... cacttggcagATATTTTACTTTGTCGGGTTTGGATTATTCTGCCTTGAGTCACTGCTGAGC
EST: AGGAGTGCTATAGTGGGG ATATTTTACTTTGTCGGGTTTGGATTATTCTGCCTTGAGTCACTGCTGAGCEST: gi|86595040|gb|CI260279.1|CI260279
genomic: AGGAGTGCTATAGTGGGGgtaagtatct ... cacttggcagATATTTTACTTTGTCGGGTTTGGATTATTCTGCCTTGAGTCACTGCTGAGC
EST: CTGGGATTTTGCCTGCCATTGATGTCATAGGCAGGAGTGCTATAGTGGGG ATATTTTACTTTGTCGGGTTTGGATTATTCTGCCTTGAGTCACTGCTGAGCEST: gi|58686999|gb|CK075686.1|CK075686
genomic: CTGGGATTTTGCCTGCCATTGATGTCATAGGCAGGAGTGCTATAGTGGGGgtaagtatct ... cacttggcagATATTTTACTTTGTCGGGTTTGGATTATTCTGCCTTGAGTCACTGCTGAGC
EST: TGGGA-TTTGCCTGCCATTGATGTCATAGGCAGGAGTGCTATAGTGGGG ATATTTTACTTTGTCGGGTTTGGATTATTCTGCCTTGAGTCACTGCTGAGCEST: gi|33803684|gb|CF327717.1|CF327717
genomic: TGGGATTTTGCCTGCCATTGATGTCATAGGCAGGAGTGCTATAGTGGGGgtaagtatct ... cacttggcagATATTTTACTTTGTCGGGTTTGGATTATTCTGCCTTGAGTCACTGCTGAGC
EST: CTGGGATTTTGCCTGCCATTGATGTCATAGGCAGGAGTGCTATAGTGGGG ATATTTTACTTTGTCGGGTTTGGATTATTCTGCCTTGAGTCACTGCTGAGCEST: gi|4881016|gb|AU065315.1|AU065315
genomic: CTGGGATTTTGCCTGCCATTGATGTCATAGGCAGGAGTGCTATAGTGGGGgtaagtatct ... cacttggcagATATTTTACTTTGTCGGGTTTGGATTATTCTGCCTTGAGTCACTGCTGAGC
EST: TGGGATTTTGCCTGCCATTGATGTCATAGGCAGGAGTGCTATAGTGGGG ATATTTTACTTTGTCGGGTTTGGATTATTCTGCCTTGAGTCACTGCTGAGC
genomic: TGGGATTTTGCCTGCCATTGATGTCATAGGCAGGAGTGCTATAGTGGGGgtaagtatct ... cacttggcagATATTTTACTTTGTCGGGTTTGGATTATTCTGCCTTGAGTCACTGCTGAGC
ccatatactggattcacatatcttataatacctcctaactattttcacttggcagATATTTTACTTTGTCGGGTTTGGATTATTCTGCCTTGAGTCACTGCTGAGCATTGGTGTCATTCAG
tcctaac putative branch site (score: 35)
ttttcactt putative PPT
acatatcttataata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accaccacatgcatctttctggctggcttagtcagcctatgaaagccatatactggattcacatatcttataatacctcctaactattttcacttggcagATATTTTACTTTGTCGGGTTTGGATTATTCTGCCTTGAGTCACTGCTGAGCATTGGTGTCATTCAG
- - - acatgca
- - - - - - - - - -tggctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gattcac