1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtggatccttttgtatcaaaatccatccacagaataacacatcattcctttcaacccctgttggtatcgctgaccccatatatttctttggaccgcaatcgcagGGATCAGCGAACCAGTACTCCGGAATTGTAAGCTGCGCCCAGACAATCCTGAGGGAGGAAGGACCTGGGGCATTCTTGAAG
species | Oryza sativa |
transcript | LOC_Os05g29860.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GGGCTATAACAACACCACTCGATGTGATGAAGACGCGGTTGATGGTTCAG GGATCAGCGAACCAGTACTCCGGAATTGTAAGCTGCGCCCAGACAATCCTGEST: gi|33681238|gb|CF309477.1|CF309477
genomic: GGGCTATAACAACACCACTCGATGTGATGAAGACGCGGTTGATGGTTCAGgtggatcctt ... gcaatcgcagGGATCAGCGAACCAGTACTCCGGAATTGTAAGCTGCGCCCAGACAATCCTG
EST: TGTGATGAAGACGCGGTTGATGGTTCAG GGATCAGCGAACCAGTACTCCGGAATTGTAAGCTGCGCCCAGACAATCCTGEST: gi|29675292|gb|CB671567.1|CB671567
genomic: TGTGATGAAGACGCGGTTGATGGTTCAGgtggatcctt ... gcaatcgcagGGATCAGCGAACCAGTACTCCGGAATTGTAAGCTGCGCCCAGACAATCCTG
EST: GGGCTATAACAACACCACTCGATGTGATGAAGACGCGGTTGATGGTTCAG GGATCAGCGAACCAGTACTCCGGAATTGTAAGCTGCGCCCAGACAATCCTGEST: gi|33653632|gb|CF276246.1|CF276246
genomic: GGGCTATAACAACACCACTCGATGTGATGAAGACGCGGTTGATGGTTCAGgtggatcctt ... gcaatcgcagGGATCAGCGAACCAGTACTCCGGAATTGTAAGCTGCGCCCAGACAATCCTG
EST: TCGATGTGATGAAGACGCGGTTGATGGTTCAG GGATCAGCGAACCAGTACTCCGGAATTGTAAGCTGCGCCCAGACAATCCTGEST: gi|86535315|gb|CI175521.1|CI175521
genomic: TCGATGTGATGAAGACGCGGTTGATGGTTCAGgtggatcctt ... gcaatcgcagGGATCAGCGAACCAGTACTCCGGAATTGTAAGCTGCGCCCAGACAATCCTG
EST: CCACTCGATGTGATGAAGACGCGGTTGATGGTTCAG GGATCAGCGAACCAGTACTCCGGAATTGTAAGCTGCGCCCAGACAATCCTGEST: gi|66915672|gb|CX102520.1|CX102520
genomic: CCACTCGATGTGATGAAGACGCGGTTGATGGTTCAGgtggatcctt ... gcaatcgcagGGATCAGCGAACCAGTACTCCGGAATTGTAAGCTGCGCCCAGACAATCCTG
EST: GGGCTATAACAACACCACTCGATGTGATGAAGACGCGGTTGATGGTTCAG GGATCAGCGAACCAGTACTCCGGAATTGTAAGCTGCGCCCAGACAATCCTGEST: gi|33683403|gb|CF311642.1|CF311642
genomic: GGGCTATAACAACACCACTCGATGTGATGAAGACGCGGTTGATGGTTCAGgtggatcctt ... gcaatcgcagGGATCAGCGAACCAGTACTCCGGAATTGTAAGCTGCGCCCAGACAATCCTG
EST: GGGCTATAACAACACCACTCGATGTGATGAAGACGCGGTTGATGGTTCAG GGATCAGCGAACCAGTACTCCGGAATTGTAAGCTGCGCCCAGACAATCCTGEST: gi|88974714|gb|CI023010.1|CI023010
genomic: GGGCTATAACAACACCACTCGATGTGATGAAGACGCGGTTGATGGTTCAGgtggatcctt ... gcaatcgcagGGATCAGCGAACCAGTACTCCGGAATTGTAAGCTGCGCCCAGACAATCCTG
EST: GGGCTATAACAACACCACTCGATGTGATGAAGACGCGGTTGATGGTTCAG GGATCAGCGAACCAGTACTCCGGAATTGTAAGCTGCGCCCAGACAATCCTGEST: gi|88956821|gb|CI009049.1|CI009049
genomic: GGGCTATAACAACACCACTCGATGTGATGAAGACGCGGTTGATGGTTCAGgtggatcctt ... gcaatcgcagGGATCAGCGAACCAGTACTCCGGAATTGTAAGCTGCGCCCAGACAATCCTG
EST: GGGCTATAACAACACCACTCGATGTGATGAAGACGCGGTTGATGGTTCAG GGATCAGCGAACCAGTACTCCGGAATTGTAAGCTGCGCCCAGACAATCCTGEST: gi|33686569|gb|CF314808.1|CF314808
genomic: GGGCTATAACAACACCACTCGATGTGATGAAGACGCGGTTGATGGTTCAGgtggatcctt ... gcaatcgcagGGATCAGCGAACCAGTACTCCGGAATTGTAAGCTGCGCCCAGACAATCCTG
EST: CGATGTGATGAAGACGCGGTT-ATGGTTCAG GGATCAGCGAACCAGTACTCCGGAATTGTAAGCTGCGCCCAGACAATCCTGEST: gi|88977074|gb|CI024811.1|CI024811
genomic: CGATGTGATGAAGACGCGGTTGATGGTTCAGgtggatcctt ... gcaatcgcagGGATCAGCGAACCAGTACTCCGGAATTGTAAGCTGCGCCCAGACAATCCTG
EST: AACACCACTCGATGTGATGAAGACGCGGTTGATGGTTCAG GGATCAGCGAACCAGTACTCCGGAATTGTAAGCTGCGCCCAGACAATCCTGEST: gi|88901491|gb|CI008919.1|CI008919
genomic: AACACCACTCGATGTGATGAAGACGCGGTTGATGGTTCAGgtggatcctt ... gcaatcgcagGGATCAGCGAACCAGTACTCCGGAATTGTAAGCTGCGCCCAGACAATCCTG
EST: CAACACCACTCGATGTGATGAAGACGCGGTTGATGGTTCAG GGATCAGCGAACCAGTACTCCGGAATTGTAAGCTGCGCCCAGACAATCCTG
genomic: CAACACCACTCGATGTGATGAAGACGCGGTTGATGGTTCAGgtggatcctt ... gcaatcgcagGGATCAGCGAACCAGTACTCCGGAATTGTAAGCTGCGCCCAGACAATCCTG
ttcaacccctgttggtatcgctgaccccatatatttctttggaccgcaatcgcagGGATCAGCGAACCAGTACTCCGGAATTGTAAGCTGCGCCCAGACAATCCTGAGGGAGGAAGGACCTGGGGCATTCTTGAAG
cgctgac putative branch site (score: 2)
atatatttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggatccttttgtatcaaaatccatccacagaataacacatcattcctttcaacccctgttggtatcgctgaccccatatatttctttggaccgcaatcgcagGGATCAGCGAACCAGTACTCCGGAATTGTAAGCTGCGCCCAGACAATCCTGAGGGAGGAAGGACCTGGGGCATTCTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG