Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagtgataaattcttcacttttaggaatcctgtgtttaactatttcatcctaaaactttcagtgatcttttgataatcctttaatggactacagATTGGGAAAGAACATCTCTTGAAAAATCTATCAGGTTTTTCAGGGCATCGTTTCTGCAACCATTGCTGAAAGCCTGCAAG

Basic information

species Oryza sativa
transcript LOC_Os05g29010.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g29010.1 (Oryza sativa), 3'ss of exon 10
lower sequence: GRMZM2G439297_T01 (Zea mays), 3'ss of exon 3
-----------------------------------------------gcaagtgataaattcttcacttttaggaatcct-gtgtttaactatttcatcctaaaactttcagtgat------cttttgataatcctttaatggactacagATTGGGAAAGAACATCTCTTGAAAAATCTATCAGGTTTTTCAGGGCATCGTTTCTGCAACCATTGCTGAAAGCCTGCAAG
                                                 |  | |||||||    |  |  |||  | || |||   |  |    | |     |||   |    ||      ||||||| ||||||  |  |   | |||||||||||||||| || ||||  ||||| ||||| ||||||||  | || || ||||| |||||||||||||| ||||||
gtaagtgattgtagccatgctccttttgtgattcgtgtaaaaacttattatttcataaattgcagaagtaaaggcgttctagtgccaagatgcagccttgcgtaacaggctaacatgctctccttttgacaatcct--atcgagtttcagATTGGGAAAGAACGTCCCTTGGGAAATCCATCAGTTTTTTCAGAACTTCCTTCCTGCACCCATTGCTGAAAGCATGCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33796820|gb|CF324277.1|CF324277
EST:     CTTTTGGGTGAGCTCAATGCAGCTGGTCTTCGTACTGATTCTGAAAACG                         ATTGGGAAAGAACATCTCTTGAAAAATCTATCAGGTTTTTCAGGGCATCGT
genomic: CTTTTGGGTGAGCTCAATGCAGCTGGTCTTCGTACTGATTCTGAAAACGgcaagtgata ... tggactacagATTGGGAAAGAACATCTCTTGAAAAATCTATCAGGTTTTTCAGGGCATCGT
EST: gi|3759043|gb|C96742.1|C96742
EST:     TTTGGGNTGAGCTCAATGCAGCCTGGTCCTCCGTACTGATNCTGAAAACG                         ATTGGGAAAGAACCATCTCTTGAAAAATCTATCAGGTTTTTTCAGGGCATC
genomic: TTTGGG-TGAGCTCAATGCAG-CTGGT-CTTCGTACTGATTCTGAAAACGgcaagtgata ... tggactacagATTGGGAAAGAA-CATCTCTTGAAAAATCTATCAGG-TTTTTCAGGGCATC
EST: gi|10930605|gb|AU160879.1|AU160879
EST:     CTTTTGGGTGAGCTCAATGCAGCTGGTCTTCGTACTGATTCTGAAAACG                         ATTGGGAAAGAACATCTCTTGAAAAATCTATCAGGTTTTTCAGGGCATCGT
genomic: CTTTTGGGTGAGCTCAATGCAGCTGGTCTTCGTACTGATTCTGAAAACGgcaagtgata ... tggactacagATTGGGAAAGAACATCTCTTGAAAAATCTATCAGGTTTTTCAGGGCATCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatttcatcctaaaactttcagtgatcttttgataatcctttaatggactacagATTGGGAAAGAACATCTCTTGAAAAATCTATCAGGTTTTTCAGGGCATCGTTTCTGCAACCATTGCTGAAAGCCTGCAAG
                            ttttgataat  TA-rich tract