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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttgtctattccccatattacgttatctattaattaaacctatatttaagcactaattttctttctttcatccttttgtgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT

Basic information

species Oryza sativa
transcript LOC_Os05g24550.4
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88218705|gb|CI218554.1|CI218554
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|33653560|gb|CF276174.1|CF276174
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|86528550|gb|CI168756.1|CI168756
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|38469357|gb|CF953488.1|CF953488
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|29689542|gb|CB685817.1|CB685817
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|88969719|gb|CI383222.1|CI383222
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACT-GGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|86431204|gb|CI083627.1|CI083627
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|86540265|gb|CI180471.1|CI180471
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATTCTGGCGAGGATTACTGT                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|86537269|gb|CI177475.1|CI177475
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|88460326|gb|CI529401.1|CI529401
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGNCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|86869490|gb|CI346350.1|CI346350
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|55431380|gb|CV728703.1|CV728703
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|88996732|gb|CI389398.1|CI389398
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|29680417|gb|CB676692.1|CB676692
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|94362581|gb|CI052700.1|CI052700
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|88415866|gb|CI536020.1|CI536020
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|86853597|gb|CI330448.1|CI330448
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|86839303|gb|CI331553.1|CI331553
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|88374897|gb|CI520963.1|CI520963
EST:     TGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: TGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|87022144|gb|CI259216.1|CI259216
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACC-AGTGGAACAGAGGATGGGGCGAT
EST: gi|86535655|gb|CI175861.1|CI175861
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|86878292|gb|CI319571.1|CI319571
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTCCAAACCAGTGGAACAAAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|86433995|gb|CI094338.1|CI094338
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|88216143|gb|CI215992.1|CI215992
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|88833829|gb|CI077310.1|CI077310
EST:     CTGTCAAGTTGATTGGATGGGGGACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|86870930|gb|CI326751.1|CI326751
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|88290080|gb|CI547717.1|CI547717
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|88259488|gb|CI363781.1|CI363781
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|33656188|gb|CF278802.1|CF278802
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|29666315|gb|CB662590.1|CB662590
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|89193799|gb|CI018117.1|CI018117
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|29658207|gb|CB654482.1|CB654482
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|88275261|gb|CI395865.1|CI395865
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|86540276|gb|CI180482.1|CI180482
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|86887633|gb|CI311916.1|CI311916
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|88276000|gb|CI396604.1|CI396604
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|86860519|gb|CI323441.1|CI323441
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|86863143|gb|CI344875.1|CI344875
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|58031395|gb|CX728938.1|CX728938
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|88250173|gb|CI250450.1|CI250450
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|86427759|gb|CI072856.1|CI072856
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|86843379|gb|CI341454.1|CI341454
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|89198824|gb|CI003561.1|CI003561
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACGGAGGATGGGGCGAC
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|29686790|gb|CB683065.1|CB683065
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|86430781|gb|CI083204.1|CI083204
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|86537065|gb|CI177271.1|CI177271
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|88987851|gb|CI017940.1|CI017940
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|86251465|gb|CI055598.1|CI055598
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|86528070|gb|CI168276.1|CI168276
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|86600729|gb|CI356486.1|CI356486
EST:     CTGTCAAGTTGATTGGATGGGGAACCAC-GATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|29639549|gb|CB644558.1|CB644558
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|88274639|gb|CI395045.1|CI395045
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|86884529|gb|CI337097.1|CI337097
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|88276419|gb|CI397023.1|CI397023
EST:     CTGTCAAGTTGATTGGATGGGGAACCAC-GATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|86528093|gb|CI168299.1|CI168299
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|88986013|gb|CI033342.1|CI033342
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|33654657|gb|CF277271.1|CF277271
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|58610249|gb|CK038121.1|CK038121
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|88446618|gb|CI536649.1|CI536649
EST:     GATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: GATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|86428106|gb|CI073203.1|CI073203
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|86838435|gb|CI327787.1|CI327787
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|18388303|gb|BM421501.1|BM421501
EST:     TGTCAAGTTGATTGGATGGGGAAGCCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCGAACCAGTGGAACAGAGGATGGGGCGAT
genomic: TGTCAAGTTGATTGGATGGGGAA-CCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|88830222|gb|CI076478.1|CI076478
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|86838331|gb|CI327712.1|CI327712
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTTCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|86911254|gb|CI317602.1|CI317602
EST:     CTGTCAAGTTGATTTGATGGGGAACCACGAATGCTGGCAAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|87030805|gb|CI362019.1|CI362019
EST:     CTGTCAAGTTGATTGGATGGTGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|88275798|gb|CI396402.1|CI396402
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
EST: gi|88966702|gb|CI365925.1|CI365925
EST:     CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGG                         CTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
genomic: CTGTCAAGTTGATTGGATGGGGAACCACGGATGCTGGCGAGGATTACTGGgtacttgtct ... tgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaacctatatttaagcactaattttctttctttcatccttttgtgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT
                 cactaat  putative branch site (score: 2)
                       ttttctttctttcatc  CT-rich tract
                    taattttctttcttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacttgtctattccccatattacgttatctattaattaaacctatatttaagcactaattttctttctttcatccttttgtgtgttacagCTGCTTGCAAACCAGTGGAACAGAGGATGGGGCGAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG