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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgattcttttaaccaaattcatgcaatattgataaagttacatgtaacgagattggatttcattgttacagGATATTAAGGAACTGTAGAATATCTGGTAATCTTGGACTAGTAGATTTCTCGAAGTTTGCAAATCTAACATATCT

Basic information

species Oryza sativa
transcript LOC_Os05g16824.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58687444|gb|CK076131.1|CK076131
EST:     GGGAGCTCTTCACTGGCTTTTATAAGCAATCTCACCTCTTTGAGCAACAT                         GATATTAAGGAACTGTAGAATATCTGGTAATCTTGGACTAGTAGATTTCTC
genomic: GGGAGCTCTTCACTGGCTTTTATAAGCAATCTCACCTCTTTGAGCAACATgtatgtgatt ... attgttacagGATATTAAGGAACTGTAGAATATCTGGTAATCTTGGACTAGTAGATTTCTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcatgcaatattgataaagttacatgtaacgagattggatttcattgttacagGATATTAAGGAACTGTAGAATATCTGGTAATCTTGGACTAGTAGATTTCTCGAAGTTTGCAAATCTAACATATCT
                         atgtaac  putative branch site (score: 3)
                                         tttcatt  putative PPT
        aatattgataaagtta  TA-rich tract