1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgagcaacaaaagtttctattcctcaattcactttggacatcatattacttaatctagaatctgatttccatgcttcatcatatgacagTCGATCAGTCCTTCCAAAGCCGATGAATTCGTCATCAAGAAGAACATCCTTTCGACTTTCTCCTCTTAAAGGGTGTCCCACGTACCCCGACGAGCAATTG
species | Oryza sativa |
transcript | LOC_Os05g06430.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTGAATACACTAAGAAGGAATCTGAGAGGCTTCAACGCATGTTGGAGAAG TCGATCAGTCCTTCCAAAGCCGATGAATTCGTCATCAAGAAGAACATCCTTEST: gi|3768455|gb|AU032482.1|AU032482
genomic: CTGAATACACTAAGAAGGAATCTGAGAGGCTTCAACGCATGTTGGAGAAGgtgagcaaca ... catatgacagTCGATCAGTCCTTCCAAAGCCGATGAATTCGTCATCAAGAAGAACATCCTT
EST: CTGAATACACTAAGAAGGAATCTGAGAGGCTTCAACGCATGTTGGAGAAG TCGATCAGTCCTTCCAAAGCCGATGAATTCGTCATCAAGAAGAACATCCTTEST: gi|58672427|gb|CK061113.1|CK061113
genomic: CTGAATACACTAAGAAGGAATCTGAGAGGCTTCAACGCATGTTGGAGAAGgtgagcaaca ... catatgacagTCGATCAGTCCTTCCAAAGCCGATGAATTCGTCATCAAGAAGAACATCCTT
EST: CTGAATACACTAAGAAGGAATCTGAGAGGCTTCAACGCATGTTGGAGAAG TCGATCAGTCCTTCCAAAGCCGATGAATTCGTCATCAAGAAGAACATCCTTEST: gi|33803520|gb|CF327635.1|CF327635
genomic: CTGAATACACTAAGAAGGAATCTGAGAGGCTTCAACGCATGTTGGAGAAGgtgagcaaca ... catatgacagTCGATCAGTCCTTCCAAAGCCGATGAATTCGTCATCAAGAAGAACATCCTT
EST: CTGAATACACTAAGAAGGAATCTGAGAGGCTTCAACGCATGTTGGAGAAG TCGATCAGTCCTTCCAAAGCCGATGAATTCGTCATCAAGAAGAACATCCTTEST: gi|2799505|gb|AA752494.1|AA752494
genomic: CTGAATACACTAAGAAGGAATCTGAGAGGCTTCAACGCATGTTGGAGAAGgtgagcaaca ... catatgacagTCGATCAGTCCTTCCAAAGCCGATGAATTCGTCATCAAGAAGAACATCCTT
EST: CTAAGAAGGAATCTGAGAGGCTTCAACGCATGTNGGAGAAG TCGATCAGTCCTTCCAAAGCCGATGAATTCGTCATCAAGAAGAACATCCTTEST: gi|11026410|gb|AU163011.1|AU163011
genomic: CTAAGAAGGAATCTGAGAGGCTTCAACGCATGTTGGAGAAGgtgagcaaca ... catatgacagTCGATCAGTCCTTCCAAAGCCGATGAATTCGTCATCAAGAAGAACATCCTT
EST: CTGAATACACTAAGAAGGAATCTGAGAGGCTTCAACGCATGTTGGAGAAG TCGATCAGTCCTTCCAAAGCCGATGAATTCGTCATCAAGAAGAACATCCTTEST: gi|86482186|gb|CI124819.1|CI124819
genomic: CTGAATACACTAAGAAGGAATCTGAGAGGCTTCAACGCATGTTGGAGAAGgtgagcaaca ... catatgacagTCGATCAGTCCTTCCAAAGCCGATGAATTCGTCATCAAGAAGAACATCCTT
EST: CTGAATACACTAAGAAGGAATCTGAGAGGCTTCAACGCATGTTGGAGAAG TCGATCAGTCCTTCCAAAGCCGATGAATTCGTCATCAAGAAGAACATCCTTEST: gi|88248551|gb|CI248400.1|CI248400
genomic: CTGAATACACTAAGAAGGAATCTGAGAGGCTTCAACGCATGTTGGAGAAGgtgagcaaca ... catatgacagTCGATCAGTCCTTCCAAAGCCGATGAATTCGTCATCAAGAAGAACATCCTT
EST: CTGAATACACTAAGAAGGAATCTGAGAGGCTTCAACGCATGTTGGAGAAG TCGATCAGTCCTTCCAAAGCCGATGAATTCGTCATCAAGAAGAACATCCTTEST: gi|86513133|gb|CI155766.1|CI155766
genomic: CTGAATACACTAAGAAGGAATCTGAGAGGCTTCAACGCATGTTGGAGAAGgtgagcaaca ... catatgacagTCGATCAGTCCTTCCAAAGCCGATGAATTCGTCATCAAGAAGAACATCCTT
EST: CTGAATACACTAAGAAGGAATCTGAGAGGCTTCAACGCATGTTGGAGAAG TCGATCAGTCCTTCCAAAGCCGATGAATTCGTCATCAAGAAGAACATCCTTEST: gi|87017864|gb|CI273886.1|CI273886
genomic: CTGAATACACTAAGAAGGAATCTGAGAGGCTTCAACGCATGTTGGAGAAGgtgagcaaca ... catatgacagTCGATCAGTCCTTCCAAAGCCGATGAATTCGTCATCAAGAAGAACATCCTT
EST: CTGAATACACTAAGAAGGAATCTGAGAGGCTTCAACGCATGTTGGAGAAG TCGATCAGTCCTTCCAAAGCCGATGAATTCGTCATCAAGAAGAACATCCTTEST: gi|27577494|gb|CB000189.1|CB000189
genomic: CTGAATACACTAAGAAGGAATCTGAGAGGCTTCAACGCATGTTGGAGAAGgtgagcaaca ... catatgacagTCGATCAGTCCTTCCAAAGCCGATGAATTCGTCATCAAGAAGAACATCCTT
EST: CTGAATACACTAAGAAGGAATCTGAGAAGCTTCAACGCATGTTGGAGAAG TCGATCAGTCCTTCCAAAGCCGATGAATTCGTCEST: gi|5003011|gb|AU068120.1|AU068120
genomic: CTGAATACACTAAGAAGGAATCTGAGAGGCTTCAACGCATGTTGGAGAAGgtgagcaaca ... catatgacagTCGATCAGTCCTTCCAAAGCCGATGAATTCGTC
EST: CTGAATACACTAAGAAGGAATCTGAGAGGCTTCAACGCATGTTGGAGAAG TCGATCAGTCCTTCCAAAGCCGATGAATTCGTCATCAAGAAGAACATCCTTEST: gi|58683615|gb|CK072302.1|CK072302
genomic: CTGAATACACTAAGAAGGAATCTGAGAGGCTTCAACGCATGTTGGAGAAGgtgagcaaca ... catatgacagTCGATCAGTCCTTCCAAAGCCGATGAATTCGTCATCAAGAAGAACATCCTT
EST: CTGAATACACTAAGAAGGAATCTGAGAGGCTTCAACGCATGTTGGAGAAG TCGATCAGTCCTTCCAAAGCCGATGAATTCGTCATCAAGAAGAACATCCTTEST: gi|33803570|gb|CF327660.1|CF327660
genomic: CTGAATACACTAAGAAGGAATCTGAGAGGCTTCAACGCATGTTGGAGAAGgtgagcaaca ... catatgacagTCGATCAGTCCTTCCAAAGCCGATGAATTCGTCATCAAGAAGAACATCCTT
EST: CTGAATACACTAAGAAGGAATCTGAGAGGCTTCAACGCATGTTGGAGAAG TCGATCAGTCCTTCCAAAGCCGATGAATTCGTCATCAAGAAGAACATCCTTEST: gi|86593482|gb|CI264361.1|CI264361
genomic: CTGAATACACTAAGAAGGAATCTGAGAGGCTTCAACGCATGTTGGAGAAGgtgagcaaca ... catatgacagTCGATCAGTCCTTCCAAAGCCGATGAATTCGTCATCAAGAAGAACATCCTT
EST: CTGAATACACTAAGAAGGAATCTGAGAGGCTTCAACGCATGTTGGAGAAG TCGATCAGTCCTTCCAAAGCCGATGAATTCGTCATCAAGAAGAACATCCTT
genomic: CTGAATACACTAAGAAGGAATCTGAGAGGCTTCAACGCATGTTGGAGAAGgtgagcaaca ... catatgacagTCGATCAGTCCTTCCAAAGCCGATGAATTCGTCATCAAGAAGAACATCCTT
tggacatcatattacttaatctagaatctgatttccatgcttcatcatatgacagTCGATCAGTCCTTCCAAAGCCGATGAATTCGTCATCAAGAAGAACATCCTTTCGACTTTCTCCTCTTAAAGGGTGTCCCACGTACCCCGACGAGCAATTG
atctgat putative branch site (score: 4)
cttcatc putative PPT
atcatattacttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcaacaaaagtttctattcctcaattcactttggacatcatattacttaatctagaatctgatttccatgcttcatcatatgacagTCGATCAGTCCTTCCAAAGCCGATGAATTCGTCATCAAGAAGAACATCCTTTCGACTTTCTCCTCTTAAAGGGTGTCCCACGTACCCCGACGAGCAATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC