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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagaagaaaataatcttatgttggactgtttattttttattttagggttgaaacctaatgtagctttcctttttttttaccaccagATCTTCCATAAAAGAATGCCTGCTGAAGCAGTCGATCTCGTCTCCAGGCTTTTGCAGTATTCACCATACCTCCGGTCCACTGCTGTGAGTGTTGTCGTTG

Basic information

species Oryza sativa
transcript LOC_Os05g04340.2
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58671594|gb|CK060280.1|CK060280
EST:     ATTACACCGAGTTTAAATTTCCGCAAATCAAAGCTCACCCATGGCACAAG                         ATCTTCTATAA
genomic: ATTACACCGAGTTTAAATTTCCGCAAATCAAAGCTCACCCATGGCACAAGgtagaagaaa ... ttaccaccagATCTTCCATAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttttattttagggttgaaacctaatgtagctttcctttttttttaccaccagATCTTCCATAAAAGAATGCCTGCTGAAGCAGTCGATCTCGTCTCCAGGCTTTTGCAGTATTCACCATACCTCCGGTCCACTGCTGTGAGTGTTGTCGTTG
                     acctaat  putative branch site (score: 3)
                                ctttccttttttttta  putative PPT
                                 tttccttttttttta  TA-rich tract