Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatccaggaaactcttacatatgtcctgttttatcctgtttctaggtgcaacattttgttaacagacgtctggtaccaaccataacaagttatcttttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG

Basic information

species Oryza sativa
transcript LOC_Os05g03480.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g03480.4 (Oryza sativa), 3'ss of exon 10
lower sequence: GRMZM2G052630_T02 (Zea mays), 3'ss of exon 9
gtatatccaggaaactcttacatatgtcctgttttatcctgtttctaggtgcaacattttgttaacagacgtctggtaccaaccataacaagttatcttttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
||| ||||  | |  |   | || | | |||||||  | || |||  | ||||| | ||| |||  |      ||| || ||| ||||  ||    ||| |||||||||||||| |||| |||||||||||||| ||||||||||||||
gtaaatccttgtagtttccatatgtcttctgttttcccgtgcttcatgatgcaatagtttattagtaccgacatggcactaacgataaagaggatgcttgtaatgcagGGGAAAATGGCTGATATGTACACCTCATTGCAGTCATCAAG

upper sequence: LOC_Os05g03480.4 (Oryza sativa), 3'ss of exon 10
lower sequence: GRMZM2G381051_T03 (Zea mays), 3'ss of exon 10
gtatatccaggaaactcttacatatgtcctgttttatcctgtttctaggtgcaaca-ttttgttaacagacgtctggtaccaaccataacaagttatcttttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
||| | ||  | |||| | | || | | ||||||| || || |||  | ||||| | |||| ||| ||| | |   | || ||| ||||  |||   ||| |||||||||||||| |||| ||||||||||| || |||||||| |||||
gtaaagccttgtaactgtcatatgtattctgttttctcgtgcttcatgttgcaataattttattagcagccat--agcactaacaataaagagtctgcttgtaatgcagGGGAAAATGGCTGATATGTACACTTCGTTGCAGTCGTCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86428807|gb|CI075488.1|CI075488
EST:     TCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: TCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|29661230|gb|CB657505.1|CB657505
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|89193724|gb|CI116357.1|CI116357
EST:     CCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: CCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|29680250|gb|CB676525.1|CB676525
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|86259889|gb|CI065762.1|CI065762
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|18386365|gb|BM419563.1|BM419563
EST:     CCAAAGAGAGCAATTTTGGCCGTCC-ATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: CCAAAGAGAGCAA-TTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|86592394|gb|CI251048.1|CI251048
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|29672430|gb|CB668705.1|CB668705
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|29668356|gb|CB664631.1|CB664631
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|29674357|gb|CB670632.1|CB670632
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATCCAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|33683927|gb|CF312166.1|CF312166
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|86428674|gb|CI075355.1|CI075355
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|89184274|gb|CI046839.1|CI046839
EST:     GCCCAAGAGAGCCATTTGGCCGTCCCATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|86823798|gb|CI258824.1|CI258824
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|29644599|gb|CB649606.1|CB649606
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|29643546|gb|CB648553.1|CB648553
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|86488039|gb|CI130672.1|CI130672
EST:     CGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: CGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|29637531|gb|CB642540.1|CB642540
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|29673823|gb|CB670098.1|CB670098
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|29641739|gb|CB646746.1|CB646746
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGGGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|86252415|gb|CI056152.1|CI056152
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|22307242|gb|BQ908464.1|BQ908464
EST:     CCAAAGAGAGC-ATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACACG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: CCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACA-Ggtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|87026900|gb|CI259553.1|CI259553
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|16753672|gb|BM038051.1|BM038051
EST:     GTGAATTCCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTT-CAGTCATCAAG
genomic: GTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|29663217|gb|CB659492.1|CB659492
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|86429655|gb|CI076336.1|CI076336
EST:     TCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: TCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|29657681|gb|CB653956.1|CB653956
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|29669234|gb|CB665509.1|CB665509
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|29674434|gb|CB670709.1|CB670709
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACCCCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|29674356|gb|CB670631.1|CB670631
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|29670747|gb|CB667022.1|CB667022
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|86259763|gb|CI065636.1|CI065636
EST:     CAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: CAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|29672136|gb|CB668411.1|CB668411
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|29675357|gb|CB671632.1|CB671632
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|29683358|gb|CB679633.1|CB679633
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|29664111|gb|CB660386.1|CB660386
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|22307122|gb|BQ908344.1|BQ908344
EST:     GCC-AAGAGAGCAATTT-GCCGTCC-ATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|88834472|gb|CI077755.1|CI077755
EST:     TGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: TGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|29663209|gb|CB659484.1|CB659484
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|29637681|gb|CB642690.1|CB642690
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATGCAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|29672648|gb|CB668923.1|CB668923
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|29667481|gb|CB663756.1|CB663756
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|88837225|gb|CI078585.1|CI078585
EST:     AATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: AATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|86412887|gb|CI067292.1|CI067292
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|58594804|gb|CF993112.1|CF993112
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|22306512|gb|BQ907734.1|BQ907734
EST:     CCCAAAGAGAGCAATTT-GCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: -CCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|29642661|gb|CB647668.1|CB647668
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|29642659|gb|CB647666.1|CB647666
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|86425023|gb|CI070120.1|CI070120
EST:     ATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: ATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|55440357|gb|CV733488.1|CV733488
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGTTTTTTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|33677636|gb|CF305875.1|CF305875
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|29680932|gb|CB677207.1|CB677207
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|89173649|gb|CI041542.1|CI041542
EST:     TGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: TGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|29664257|gb|CB660532.1|CB660532
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|33683926|gb|CF312165.1|CF312165
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|18386948|gb|BM420146.1|BM420146
EST:     GCCAAAGAGAGCAATTT-GCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|428577|gb|D24729.1|D24729
EST:     GCCAAANAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|29665695|gb|CB661970.1|CB661970
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|29661040|gb|CB657315.1|CB657315
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|29679285|gb|CB675560.1|CB675560
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|86866433|gb|CI343411.1|CI343411
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTCCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|29664204|gb|CB660479.1|CB660479
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|18386397|gb|BM419595.1|BM419595
EST:     CCGTCCAATTGGTGAATTTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: CCGTCCAATTGGTGAA-TTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|29663798|gb|CB660073.1|CB660073
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|84117533|gb|CD151300.1|CD151300
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTAC
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTAC
EST: gi|29637680|gb|CB642689.1|CB642689
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCATATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|29671621|gb|CB667896.1|CB667896
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|86260123|gb|CI065996.1|CI065996
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|88990521|gb|CI107908.1|CI107908
EST:     GTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|218479296|gb|FG957919.1|FG957919
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|29678948|gb|CB675223.1|CB675223
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|29669119|gb|CB665394.1|CB665394
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|29661172|gb|CB657447.1|CB657447
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|29680495|gb|CB676770.1|CB676770
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|29658318|gb|CB654593.1|CB654593
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|89184088|gb|CI046653.1|CI046653
EST:     GCCAAAGAGAGCAATTTGGCCGTCCCATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|18386437|gb|BM419635.1|BM419635
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|86436256|gb|CI117978.1|CI117978
EST:     AGAGAGCCATTTGCCCGTCCCATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: AGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|88993293|gb|CI257721.1|CI257721
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|88831435|gb|CI083829.1|CI083829
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|89185669|gb|CI047538.1|CI047538
EST:     GCCCAAGAGAGCCATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
EST: gi|29661525|gb|CB657800.1|CB657800
EST:     GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAG                         GGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
genomic: GCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 49 (upstream exon), 45 (downstream exon)
Score: 44

TCCTATCGGCCTCATGCAAGCATGCCTTGATGTAGCTGTTCCTTATGTTCGCCAAAGAGAGCAATTTGGCCGTCCAATTGGTGAATTTCAGTTCATACAGgtatatccag ... tttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG




<











<


<











 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acattttgttaacagacgtctggtaccaaccataacaagttatcttttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG
                                       ttatctttt  CT-rich tract
                                    aagttatcttttaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatatccaggaaactcttacatatgtcctgttttatcctgtttctaggtgcaacattttgttaacagacgtctggtaccaaccataacaagttatcttttaatgcagGGGAAATTGGCAGATATGTACACCTCCTTGCAGTCATCAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGAT