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gtaacagttctcagcttcaactgctcattgttggctttactaacctatgtttttattatcataacaacataatggtgaacctttttggaaatattggatgatgtagttgatgaattgaccagcttaatgattttttttgttagaatttcatcagcacagaaattgttttttgcagCATTTGGCTTTACTGAAATTGGAAGTTGCCCCCTTCATGGATATCACTACACCTGGAACCACACAAATGTTTTTCCACAAAGTCCCTCAGCTCCAATACT
species | Oryza sativa |
transcript | LOC_Os05g01240.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AGTGGGCCCTGCTGGTTTTTGCGGTCATTCTTTTGATCAAAATAATGAAG CATTTGGCTTTACTGAAATTGGAAGTTGCCCCCTTCATGGATATCACTACAEST: gi|218499345|gb|FG943594.1|FG943594
genomic: AGTGGGCCCTGCTGGTTTTTGCGGTCATTCTTTTGATCAAAATAATGAAGgtaacagttc ... ttttttgcagCATTTGGCTTTACTGAAATTGGAAGTTGCCCCCTTCATGGATATCACTACA
EST: GTGGGCCCTGCTGGTTTTTGCGGTCATTCTTTATGATCAAAATAATGAAG CATTTGGCTTTACTGAAATTGGAAGTTGCCCCCTTCATGGATATCACTACAEST: gi|33794260|gb|CF323020.1|CF323020
genomic: GTGGGCCCTGCTGGTTTTTGCGGTCATTCTTT-TGATCAAAATAATGAAGgtaacagttc ... ttttttgcagCATTTGGCTTTACTGAAATTGGAAGTTGCCCCCTTCATGGATATCACTACA
EST: AGTGGGCCCTGCTGGTTTTTGCGGTCATTCTTTTGATCAAAATAATGAAG CATTTGGCTTTACTGAAATTGGAAGTTGCCCCCTTCATGGATATCACTACA
genomic: AGTGGGCCCTGCTGGTTTTTGCGGTCATTCTTTTGATCAAAATAATGAAGgtaacagttc ... ttttttgcagCATTTGGCTTTACTGAAATTGGAAGTTGCCCCCTTCATGGATATCACTACA
agcttaatgattttttttgttagaatttcatcagcacagaaattgttttttgcagCATTTGGCTTTACTGAAATTGGAAGTTGCCCCCTTCATGGATATCACTACACCTGGAACCACACAAATGTTTTTCCACAAAGTCCCTCAGCTCCAATACT
gcttaat putative branch site (score: 4)
ttgtttttt putative PPT
aatgattttttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacagttctcagcttcaactgctcattgttggctttactaacctatgtttttattatcataacaacataatggtgaacctttttggaaatattggatgatgtagttgatgaattgaccagcttaatgattttttttgttagaatttcatcagcacagaaattgttttttgcagCATTTGGCTTTACTGAAATTGGAAGTTGCCCCCTTCATGGATATCACTACACCTGGAACCACACAAATGTTTTTCCACAAAGTCCCTCAGCTCCAATACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC