1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ggaccgtgtgactatctgtaaacaccatcagtccattgaaaaggaaaaacttttaatcctcacagctatttttgactttgctcccatttgttgtatgcagTTCATTGAAGTTGGTACGATGGTTTCTCCGACCATTTATGCGCGGCGTTGCCTGTCATATCTGATGAATGACAAGGCAGAACAAGCTCTCAGTGATGCGA
species | Oryza sativa |
transcript | LOC_Os04g58750.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATGCTTTTCGACAAAAGGACTTCTCTTCTGCAATTGACTGTTATTCTCAG TTCATTGAAGTTGGTACGATGGTTTEST: gi|86482095|gb|CI124728.1|CI124728
genomic: ATGCTTTTCGACAAAAGGACTTCTCTTCTGCAATTGACTGTTATTCTCAGgttgattttg ... ttgtatgcagTTCATTGAAGTTGGTACGATGGTTT
EST: ATGCTTTTCGACAAAAGGACTTCTCTTCTGCAATTGACTGTTATTCTCAG TTCATTGGAGTTGGTACGATGGTTTCTCCGACCATTTATGCGCGGCGTTGCEST: gi|33796952|gb|CF324339.1|CF324339
genomic: ATGCTTTTCGACAAAAGGACTTCTCTTCTGCAATTGACTGTTATTCTCAGgttgattttg ... ttgtatgcagTTCATTGAAGTTGGTACGATGGTTTCTCCGACCATTTATGCGCGGCGTTGC
EST: ATGCTTTTCGACAAAAGGACTTCTCTTCTGCAATTGACTGTTATTCTCAG TTCATTGAAGTTGGTACGATGGTTTCTCCGACCATTTATGCGCGGCGTTGCEST: gi|33675770|gb|CF304009.1|CF304009
genomic: ATGCTTTTCGACAAAAGGACTTCTCTTCTGCAATTGACTGTTATTCTCAGgttgattttg ... ttgtatgcagTTCATTGAAGTTGGTACGATGGTTTCTCCGACCATTTATGCGCGGCGTTGC
EST: ATGCTTTTCGACAAAAGGACTTCTCTTCTGCAATTGACTGTTATTCTCAG TTCATTGAAGTTGGTACGATGGTTTCTCCGACCATTTATGCGCGGCGTTGCEST: gi|29636566|gb|CB641575.1|CB641575
genomic: ATGCTTTTCGACAAAAGGACTTCTCTTCTGCAATTGACTGTTATTCTCAGgttgattttg ... ttgtatgcagTTCATTGAAGTTGGTACGATGGTTTCTCCGACCATTTATGCGCGGCGTTGC
EST: ATGCTTTTCGACAAAAGGACTTCTCTTCTGCAATTGACTGTTATTCTCAG TTCATTGAAGTTGGTACGATGGTTTCTCCGACCATTTATGCGCGGCGTTGCEST: gi|87005460|gb|CI285682.1|CI285682
genomic: ATGCTTTTCGACAAAAGGACTTCTCTTCTGCAATTGACTGTTATTCTCAGgttgattttg ... ttgtatgcagTTCATTGAAGTTGGTACGATGGTTTCTCCGACCATTTATGCGCGGCGTTGC
EST: ATGCTTTTCGACAAAAGGACTTCTCTTCTGCAATTGACTGTTATTCTCAG TTCATTGAAGTTGGTACGATGGTTTCTCCGACCATTTATGCGCGGCGTTGCEST: gi|33679197|gb|CF307436.1|CF307436
genomic: ATGCTTTTCGACAAAAGGACTTCTCTTCTGCAATTGACTGTTATTCTCAGgttgattttg ... ttgtatgcagTTCATTGAAGTTGGTACGATGGTTTCTCCGACCATTTATGCGCGGCGTTGC
EST: ATGCTTTTCGACAAAAGGACTTCTCTTCTGCAATTGACTGTTATTCTCAG TTCATTGAAGTTGGTACGATGGTTTCTCCGACCATTTATGCGCGGCGTTGC
genomic: ATGCTTTTCGACAAAAGGACTTCTCTTCTGCAATTGACTGTTATTCTCAGgttgattttg ... ttgtatgcagTTCATTGAAGTTGGTACGATGGTTTCTCCGACCATTTATGCGCGGCGTTGC
aaaacttttaatcctcacagctatttttgactttgctcccatttgttgtatgcagTTCATTGAAGTTGGTACGATGGTTTCTCCGACCATTTATGCGCGGCGTTGCCTGTCATATCTGATGAATGACAAGGCAGAACAAGCTCTCAGTGATGCGA
tatttttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggaccgtgtgactatctgtaaacaccatcagtccattgaaaaggaaaaacttttaatcctcacagctatttttgactttgctcccatttgttgtatgcagTTCATTGAAGTTGGTACGATGGTTTCTCCGACCATTTATGCGCGGCGTTGCCTGTCATATCTGATGAATGACAAGGCAGAACAAGCTCTCAGTGATGCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- -ccgtgtg
- - - - - - - - - - - caccatc
- - - - - - - - - - - - - - - - - - - - -aggaaaa