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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagccagcctctttattttctgacgattatgtgatgcttagttattgcatattgcatgtgttatgtgcagcaggtttgcttatttgatttttatggggttccttcagATGGAGAAGGAGCTCAGTTATCTTGGCTCAGACGAATGAAAATAGCCATTGGCATCGCGCAGGGTCTAAGATACCTGCATACCGAGTTGCAGCCTCCATT

Basic information

species Oryza sativa
transcript LOC_Os04g58700.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g58700.1 (Oryza sativa), 3'ss of exon 10
lower sequence: GRMZM2G119759_T03 (Zea mays), 3'ss of exon 9
gtaagccagcctctttattttctgacgattatgtgatgcttagttattgcatattgcatgtgttatgtgcagcaggtttgcttatttgatttttatggggttccttcagATGGAGAAGGAGCTCAGTTATCTTGGCTCAGACGAATGAAAATAGCCATTGGCATCGCGCAGGGTCTAAGATACCTGCATACCGAGTTGCAGCCTCCATT
||||| ||  |||| | ||| ||     |||    | |||     || || |||| ||||| | |  | |   | |  ||   ||  | ||||       ||  || ||||||||| ||||  || || ||||||||||| |||||||| ||||||||||| || || |||||  ||||||||||||| || ||| ||||||| |||||
gtaagtca--ctctctctttgctagt--ttactgcaggctggtgaatggcctatttcatgtctaaatttcgttatgaatgtggat--ggttttc------tttatttagATGGAGAGGGAGGCCAATTTTCTTGGCTCAGGCGAATGAAGATAGCCATTGGAATTGCCCAGGGGTTAAGATACCTGCACACGGAGCTGCAGCCCCCATT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcatgtgttatgtgcagcaggtttgcttatttgatttttatggggttccttcagATGGAGAAGGAGCTCAGTTATCTTGGCTCAGACGAATGAAAATAGCCATTGGCATCGCGCAGGGTCTAAGATACCTGCATACCGAGTTGCAGCCTCCATT
                             atttgat  putative branch site (score: 5)
                                              ttccttc  putative PPT
                           ttatttgatttttat  TA-rich tract