1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...agcctatattgaaggccaaaacggcaacttttcccttctatatgtgttaaatgtatcacttgtgagttctgatacttgtatattatttgaccattttcagGCTGAGCTGGCTGAATGTTTGGAAAGAGATGGTTTCAAATCTGTTCAGGAAGCTGTTGGGGCAGATTTCAAATGAGCTTCGTGAGATTTCAAGATTGTAT
species | Oryza sativa |
transcript | LOC_Os04g57950.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTTACACTGCATTTGCCTATGGTGGCCCACCTCTTATACCCAGAATAAAG GCTGAGCCGGCTGAATGTTTGGAAAGAGATGGTTTCAAATCTGTTCAGGAAEST: gi|38475813|gb|CF959946.1|CF959946
genomic: TTTACACTGCATTTGCCTATGGTGGCCCAGCTCTTATACCCAGAATAAAGgtcataagtg ... ccattttcagGCTGAGCTGGCTGAATGTTTGGAAAGAGATGGTTTCAAATCTGTTCAGGAA
EST: TTTACACTGCATTTGCCTATGGTGGCCCAGCTCTTATACCCAGAATAAAG GCTGAGCTGGCTGAATGTTTGGAAAGAGATGGTTTCAAATCTGTTCAGGAAEST: gi|66922076|gb|CX108924.1|CX108924
genomic: TTTACACTGCATTTGCCTATGGTGGCCCAGCTCTTATACCCAGAATAAAGgtcataagtg ... ccattttcagGCTGAGCTGGCTGAATGTTTGGAAAGAGATGGTTTCAAATCTGTTCAGGAA
EST: CTTATACCCAGAATAAAG GCTGAGCTGGCTGAATGTTTGGAAAGAGATGGTTTCAAATCTGTTCAGGAAEST: gi|86869590|gb|CI346450.1|CI346450
genomic: CTTATACCCAGAATAAAGgtcataagtg ... ccattttcagGCTGAGCTGGCTGAATGTTTGGAAAGAGATGGTTTCAAATCTGTTCAGGAA
EST: TGCCTATGGTGGCCCACCTCTTATACCCAGAATAAAGG GCTGAGCTGGCTGAATGTTTGGAAAGAGATGGTTTCAAATCTGTTCAGGA
genomic: TGCCTATGGTGGCCCAGCTCTTATACCCAGAATAAA-Ggtcataagtg ... ccattttcagGCTGAGCTGGCTGAATGTTTGGAAAGAGATGGTTTCAAATCTGTTCAGGA
gttaaatgtatcacttgtgagttctgatacttgtatattatttgaccattttcagGCTGAGCTGGCTGAATGTTTGGAAAGAGATGGTTTCAAATCTGTTCAGGAAGCTGTTGGGGCAGATTTCAAATGAGCTTCGTGAGATTTCAAGATTGTAT
ccattttc CT-rich tract
atacttgtatattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcctatattgaaggccaaaacggcaacttttcccttctatatgtgttaaatgtatcacttgtgagttctgatacttgtatattatttgaccattttcagGCTGAGCTGGCTGAATGTTTGGAAAGAGATGGTTTCAAATCTGTTCAGGAAGCTGTTGGGGCAGATTTCAAATGAGCTTCGTGAGATTTCAAGATTGTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - -tgaaggc
- - - - - - - - - - - - - - - - - - - - - tgtgtta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgatac