1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttcacactatctgctatagctctcttatgaattacctggcataggttctgatatctcaaccatcaccagttgatcacacgctctttctatgtttccacagGATGGTGTTGCGAACTACTTGAAAGGACTTATGCTGATCTTGTGTTATCTAATAGTTGCCGCCAGTTTCTTCGTTCACGTTGATCCACAATCCA
species | Oryza sativa |
transcript | LOC_Os04g55940.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AAACAGCAACGCTCTTCATACCAGTACTAGTCGTGGCATTTATGCTACAG GATGGTGTTGCGAACTACTTGAAAGGACTTATGCTGATCTTGTGTTATCTAEST: gi|88262940|gb|CI366566.1|CI366566
genomic: AAACAGCAACGCTCTTCATAACAGTACTAGTCGTGGCATTTATGCTACAGgtaggttatt ... gtttccacagGATGGTGTTGCGAACTACTTGAAAGGACTTATGCTGATCTTGTGTTATCTA
EST: TCTTCATAACAGTACTACTCGT-GCATTTATGCTACAG GATGGT-TTGCGAACTACTTGAAA-GACTTATGCTGATCTTGTGTTATCTAEST: gi|66923908|gb|CX110756.1|CX110756
genomic: TCTTCATAACAGTACTAGTCGTGGCATTTATGCTACAGgtaggttatt ... gtttccacagGATGGTGTTGCGAACTACTTGAAAGGACTTATGCTGATCTTGTGTTATCTA
EST: AAACAGCAACGCTCTTCATAACAGTACTAGTCGTGGCATTTATGCTACAG GATGGTGTTGCGAACTACTTGAAAGGACTTATGCTGATCTTGTGTTATCTAEST: gi|86832984|gb|CI333583.1|CI333583
genomic: AAACAGCAACGCTCTTCATAACAGTACTAGTCGTGGCATTTATGCTACAGgtaggttatt ... gtttccacagGATGGTGTTGCGAACTACTTGAAAGGACTTATGCTGATCTTGTGTTATCTA
EST: TTTATGCTACAG GATGGTGGTTGCGAACTACTTGAAAGGACTTATGCTGATCTTGTGTTATCTEST: gi|86258579|gb|CI064932.1|CI064932
genomic: TTTATGCTACAGgtaggttatt ... gtttccacagGATGGT-GTTGCGAACTACTTGAAAGGACTTATGCTGATCTTGTGTTATCT
EST: AAACAGCAACGCTCTTCATAACAGTACTAGTCGTGGCATTTATGCTACAG GATGGTGTTGCGAACTACTTGAAAGGACTTATGCTGATCTTGTGTTATCTAEST: gi|33381504|gb|CF196847.1|CF196847
genomic: AAACAGCAACGCTCTTCATAACAGTACTAGTCGTGGCATTTATGCTACAGgtaggttatt ... gtttccacagGATGGTGTTGCGAACTACTTGAAAGGACTTATGCTGATCTTGTGTTATCTA
EST: AAACAGCAACGCTCTTCATAACAGTACTAGTCGTGGCATTTATGCTACAG GATGGTGTTGCGAACTACTTGAAAGGACTTATGCTGATCTTGTGTTATCTAEST: gi|58669001|gb|CK057687.1|CK057687
genomic: AAACAGCAACGCTCTTCATAACAGTACTAGTCGTGGCATTTATGCTACAGgtaggttatt ... gtttccacagGATGGTGTTGCGAACTACTTGAAAGGACTTATGCTGATCTTGTGTTATCTA
EST: AAACAGCAACGCTCTTCATAACAGTACTAGTCGTGGCATTTATGCTACAG GATGGTGTTGCGAACTACTTGAAAGGACTTATGCTGATCTTGTGTTATCTA
genomic: AAACAGCAACGCTCTTCATAACAGTACTAGTCGTGGCATTTATGCTACAGgtaggttatt ... gtttccacagGATGGTGTTGCGAACTACTTGAAAGGACTTATGCTGATCTTGTGTTATCTA
ttctgatatctcaaccatcaccagttgatcacacgctctttctatgtttccacagGATGGTGTTGCGAACTACTTGAAAGGACTTATGCTGATCTTGTGTTATCTAATAGTTGCCGCCAGTTTCTTCGTTCACGTTGATCCACAATCCA
ctctttctatgtttcc CT-rich tract
tttctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcacactatctgctatagctctcttatgaattacctggcataggttctgatatctcaaccatcaccagttgatcacacgctctttctatgtttccacagGATGGTGTTGCGAACTACTTGAAAGGACTTATGCTGATCTTGTGTTATCTAATAGTTGCCGCCAGTTTCTTCGTTCACGTTGATCCACAATCCA
ttcacac
- - - - atctgct
- - - - - - - - - - - -cttatga
- - - - - - - - - - - - - - - - tacctgg
- - - - - - - - - - - - - - - - - - - - - -ggttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caccagt