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gttagtatcttgacaaaaatatcaaatttggcaatcaagaatctctttatgctagttcttacaaccatgctgcccaaatcttattgcagATACATTACCTAGTGTCACATTGGGGCTCAGACGAGAATACACTTGGATCCTACACCTTCGATGGGGTGGGCAAACCTCGTGACCTGTATGAGAAGCTGC
species | Oryza sativa |
transcript | LOC_Os04g53190.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AATTTGCCTTCTCTCAGCTGAAGAAGATCCTGCCCACCGCTGCCGAGCCG ATACATTACCTAGTGTCACATTGGGGCTCAGACGAGAATACACTTGGATCCEST: gi|218480004|gb|FG954449.1|FG954449
genomic: AATTTGCCTTCTCTCAGCTGAAGAAGATCCTGCCCAACGCTGCCGAGCCGgttagtatct ... cttattgcagATACATTACCTAGTGTCACATTGGGGCTCAGACGAGAATACACTTGGATCC
EST: AATTTGCCTTCTCTCAGCTGAAGAAGATCCTGCCCACCGCTGCCGAGCCG ATACATTACCTAGTGTCACATTGGGGCTCAGACGAGAATACACTTGGATCCEST: gi|218503773|gb|FG969028.1|FG969028
genomic: AATTTGCCTTCTCTCAGCTGAAGAAGATCCTGCCCAACGCTGCCGAGCCGgttagtatct ... cttattgcagATACATTACCTAGTGTCACATTGGGGCTCAGACGAGAATACACTTGGATCC
EST: AATTTGCCTTCTCTCAGCTGAAGAAGATCCTGCCCACCGCTGCCGAGCCG ATACATTACCTAGTGTCACATTGGGGCTCAGACGAGAATACACTTGGATCCEST: gi|29612855|gb|CB617868.1|CB617868
genomic: AATTTGCCTTCTCTCAGCTGAAGAAGATCCTGCCCAACGCTGCCGAGCCGgttagtatct ... cttattgcagATACATTACCTAGTGTCACATTGGGGCTCAGACGAGAATACACTTGGATCC
EST: AATTTGCCTTCTCTCAGCTGAAGAAGATCCTGCCCAACGCTGCCGAGCCG ATACATTACCTAGTGTCACATTGGGGCTCAGACGAGAATACACTTGGATCCEST: gi|29612734|gb|CB617747.1|CB617747
genomic: AATTTGCCTTCTCTCAGCTGAAGAAGATCCTGCCCAACGCTGCCGAGCCGgttagtatct ... cttattgcagATACATTACCTAGTGTCACATTGGGGCTCAGACGAGAATACACTTGGATCC
EST: AATTTGCCTTCTCTCAGCTGAAGAAGATCCTGCCCAACGCTGCCGAGCCG ATACATTACCTAGTGTCACATTGGGGCTCAGACGAGAATACACTTGGATCCEST: gi|29612994|gb|CB618007.1|CB618007
genomic: AATTTGCCTTCTCTCAGCTGAAGAAGATCCTGCCCAACGCTGCCGAGCCGgttagtatct ... cttattgcagATACATTACCTAGTGTCACATTGGGGCTCAGACGAGAATACACTTGGATCC
EST: AATTTGCCTTCTCTCAGCTGAAGAAGATCCTGCCCAACGCTGCCGAGCCG ATACATTACCTAGTGTCACATTGGGGCTCAGACGAGAATACACTTGGATCCEST: gi|58594327|gb|CF992635.1|CF992635
genomic: AATTTGCCTTCTCTCAGCTGAAGAAGATCCTGCCCAACGCTGCCGAGCCGgttagtatct ... cttattgcagATACATTACCTAGTGTCACATTGGGGCTCAGACGAGAATACACTTGGATCC
EST: AATTTGCCTTCTCTCAGCTGAAGAAGATCCTGCCCAACGCTGCCGAGCCG ATACATTACCTAGTGTCACATTGGGGCTCAGACGEST: gi|29616581|gb|CB621593.1|CB621593
genomic: AATTTGCCTTCTCTCAGCTGAAGAAGATCCTGCCCAACGCTGCCGAGCCGgttagtatct ... cttattgcagATACATTACCTAGTGTCACATTGGGGCTCAGACG
EST: AATTTGCCTTCTCTCAGCTGAAGAAGATCCTGCCCAACGCTGCCGAGCCG ATACATTACCTAGTGTCACATTGGGGCTCAGACGAGAATACACTTGGATCCEST: gi|29616810|gb|CB621822.1|CB621822
genomic: AATTTGCCTTCTCTCAGCTGAAGAAGATCCTGCCCAACGCTGCCGAGCCGgttagtatct ... cttattgcagATACATTACCTAGTGTCACATTGGGGCTCAGACGAGAATACACTTGGATCC
EST: AATTTGCCTTCTCTCAGCTGAAGAAGATCCTGCCCAACGCTGCCGAGCCG ATACATTACCTAGTGTCACATTGGGGCTCAGACGAGAATACACTTGGATCCEST: gi|86498973|gb|CI141606.1|CI141606
genomic: AATTTGCCTTCTCTCAGCTGAAGAAGATCCTGCCCAACGCTGCCGAGCCGgttagtatct ... cttattgcagATACATTACCTAGTGTCACATTGGGGCTCAGACGAGAATACACTTGGATCC
EST: TCTCTCAGCTGAAGAAGATCCTGCCCAACGCTGCCGAGCCG ATACATTACCTAGTGTCACATTGGGGCTCAGACGAGAATACACTTGGATCCEST: gi|29613436|gb|CB618449.1|CB618449
genomic: TCTCTCAGCTGAAGAAGATCCTGCCCAACGCTGCCGAGCCGgttagtatct ... cttattgcagATACATTACCTAGTGTCACATTGGGGCTCAGACGAGAATACACTTGGATCC
EST: AATTTGCCTTCTCTCAGCTGAAGAAGATCCTGCCCAACGCTGCCGAGCCG ATACATTACCTAGTGTCACATTGGGGCTCAGACGAGAATACACTTGGATCCEST: gi|29617403|gb|CB622415.1|CB622415
genomic: AATTTGCCTTCTCTCAGCTGAAGAAGATCCTGCCCAACGCTGCCGAGCCGgttagtatct ... cttattgcagATACATTACCTAGTGTCACATTGGGGCTCAGACGAGAATACACTTGGATCC
EST: AATTTGCCTTCTCTCAGCTGAAGAAGATCCTGCCCAACGCTGCCGAGCCG ATACATTACCTAGTGTCACATTGGGGCTCAGACGAGAATACACTTGGATCCEST: gi|218482240|gb|FG963709.1|FG963709
genomic: AATTTGCCTTCTCTCAGCTGAAGAAGATCCTGCCCAACGCTGCCGAGCCGgttagtatct ... cttattgcagATACATTACCTAGTGTCACATTGGGGCTCAGACGAGAATACACTTGGATCC
EST: AATTTGCCTTCTCTCAGCTGAAGAAGATCCTGCCCACCGCTGCCGAGCCG ATACATTACCTAGTGTCACATTGGGGCTCAGACGAGAATACACTTGGATCCEST: gi|25803690|gb|CA759651.1|CA759651
genomic: AATTTGCCTTCTCTCAGCTGAAGAAGATCCTGCCCAACGCTGCCGAGCCGgttagtatct ... cttattgcagATACATTACCTAGTGTCACATTGGGGCTCAGACGAGAATACACTTGGATCC
EST: TTGCCTTCTCTCAGCTGAAGAAGATCCTGCCCACCGCTGCCGAGCCG ATACATTACCTAGTGTCACATTGGGGCTCAGACGAGAATACACTTGGATCCEST: gi|29641059|gb|CB646066.1|CB646066
genomic: TTGCCTTCTCTCAGCTGAAGAAGATCCTGCCCAACGCTGCCGAGCCGgttagtatct ... cttattgcagATACATTACCTAGTGTCACATTGGGGCTCAGACGAGAATACACTTGGATCC
EST: AATTTGCCTTCTCTCAGCTGAAGAAGATCCTGCCCAACGCTGCCGAGCCG ATACATTACCTAGTGTCACATTGGGGCTCAGACGAGAATACACTTGGATCCEST: gi|29638006|gb|CB643015.1|CB643015
genomic: AATTTGCCTTCTCTCAGCTGAAGAAGATCCTGCCCAACGCTGCCGAGCCGgttagtatct ... cttattgcagATACATTACCTAGTGTCACATTGGGGCTCAGACGAGAATACACTTGGATCC
EST: AATTTGCCTTCTCTCAGCTGAAGAAGATCCTGCCCAACGCTGCCGAGCCG ATACATTACCTAGTGTCACATTGGGGCTCAGACGAGAATACACTTGGATCCEST: gi|29674502|gb|CB670777.1|CB670777
genomic: AATTTGCCTTCTCTCAGCTGAAGAAGATCCTGCCCAACGCTGCCGAGCCGgttagtatct ... cttattgcagATACATTACCTAGTGTCACATTGGGGCTCAGACGAGAATACACTTGGATCC
EST: AATTTGCCTTCTCTCAGCTGAAGAAGATCCTGCCCAACGCTGCCGAGCCG ATACATTACCTAGTGTCACATTGGGGCTCAGACGAGAATACACTTGGATCCEST: gi|58590449|gb|CF988757.1|CF988757
genomic: AATTTGCCTTCTCTCAGCTGAAGAAGATCCTGCCCAACGCTGCCGAGCCGgttagtatct ... cttattgcagATACATTACCTAGTGTCACATTGGGGCTCAGACGAGAATACACTTGGATCC
EST: AATTTGCCTTCTCTCAGCTGAAGAAGATCCTGCCCAACGCTGCCGAGCCG ATACATTACCTAGTGTCACATTGGGGCTCAGACGAGAATACACTTGGATCCEST: gi|58690094|gb|CK078781.1|CK078781
genomic: AATTTGCCTTCTCTCAGCTGAAGAAGATCCTGCCCAACGCTGCCGAGCCGgttagtatct ... cttattgcagATACATTACCTAGTGTCACATTGGGGCTCAGACGAGAATACACTTGGATCC
EST: AATTTGCCTTCTCTCAGCTGAAGAAGATCCTGCCCAACGCTGCCGAGCCG ATACATTACCTAGTGTCACATTGGGGCTCAGACGAGAATACACTTGGATCC
genomic: AATTTGCCTTCTCTCAGCTGAAGAAGATCCTGCCCAACGCTGCCGAGCCGgttagtatct ... cttattgcagATACATTACCTAGTGTCACATTGGGGCTCAGACGAGAATACACTTGGATCC
tcaagaatctctttatgctagttcttacaaccatgctgcccaaatcttattgcagATACATTACCTAGTGTCACATTGGGGCTCAGACGAGAATACACTTGGATCCTACACCTTCGATGGGGTGGGCAAACCTCGTGACCTGTATGAGAAGCTGC
ttcttac putative branch site (score: 40)
tcttatt putative PPT
aaatcttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtatcttgacaaaaatatcaaatttggcaatcaagaatctctttatgctagttcttacaaccatgctgcccaaatcttattgcagATACATTACCTAGTGTCACATTGGGGCTCAGACGAGAATACACTTGGATCCTACACCTTCGATGGGGTGGGCAAACCTCGTGACCTGTATGAGAAGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC