1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gtaaattgcttgttattggcttgcacatatgactcgcaagtgttatggcattgattcgccaatgtgtcaggctgtttattttgttttatagGAACGTGATAATGAAGAAGCATCATGCAGATCTGCCCGTGCGGGATCTGATATAACACAACTTCAATCAGTG
species | Oryza sativa |
transcript | LOC_Os04g46450.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATTCTTTGCGAGCAGAAGTCCATTCACTTTCTCGCATTCTGTCCAGAAAG GAACGTGATAATGAAGAAGCATCATGCAGATCTGCEST: gi|58658167|gb|CK046847.1|CK046847
genomic: ATTCTTTGCGAGCAGAAGTCCATTCACTTTCTCGCATTCTGTCCAGAAAGgtaaattgct ... tgttttatagGAACGTGATAATGAAGAAGCATCATGCAGATCTGC
EST: GTCCATTCACTTTCTCGCATTCTGTCCAGAAAG GAACGTGATAATGAAGAAGCATCATGCAGATCTGCCCGTGCTGGATCTGATEST: gi|58659385|gb|CK048065.1|CK048065
genomic: GTCCATTCACTTTCTCGCATTCTGTCCAGAAAGgtaaattgct ... tgttttatagGAACGTGATAATGAAGAAGCATCATGCAGATCTGCCCGTGCGGGATCTGAT
EST: CATTCACTTTCTCGCATTCTGTCCAGAAAG GAACGTGATAATGAAGAAGCATCATGCAGATCTGCCCGTGCTGGATCTGATEST: gi|29679837|gb|CB676112.1|CB676112
genomic: CATTCACTTTCTCGCATTCTGTCCAGAAAGgtaaattgct ... tgttttatagGAACGTGATAATGAAGAAGCATCATGCAGATCTGCCCGTGCGGGATCTGAT
EST: ATTCTTTGCGAGCAGAAGTCCATTCACTTTCTCGCATTCTGTCCAGAAAG GAACGTGATAATGAAGAAGCATCATGCAGATCTGCCCGTGCGGGATCTGATEST: gi|58694603|gb|CK083290.1|CK083290
genomic: ATTCTTTGCGAGCAGAAGTCCATTCACTTTCTCGCATTCTGTCCAGAAAGgtaaattgct ... tgttttatagGAACGTGATAATGAAGAAGCATCATGCAGATCTGCCCGTGCGGGATCTGAT
EST: ATTCTTTGCGAGCAGAAGTCCATTCACTTTCTCGCATTCTGTCCAGAAAG GAACGTGATAATGAAGAAGCATCATGCAGATCTGCCCGTGCTGGATCTGATEST: gi|29641437|gb|CB646444.1|CB646444
genomic: ATTCTTTGCGAGCAGAAGTCCATTCACTTTCTCGCATTCTGTCCAGAAAGgtaaattgct ... tgttttatagGAACGTGATAATGAAGAAGCATCATGCAGATCTGCCCGTGCGGGATCTGAT
EST: ATTCTTTGCGAGCAGAAGTCCATTCACTTTCTCGCATTCTGTCCAGAAAG GAACGTGATAATGAAGAAGCATCATGCAGATCTGCCCGTGCGGGATCTGATEST: gi|325493787|gb|JG458311.1|JG458311
genomic: ATTCTTTGCGAGCAGAAGTCCATTCACTTTCTCGCATTCTGTCCAGAAAGgtaaattgct ... tgttttatagGAACGTGATAATGAAGAAGCATCATGCAGATCTGCCCGTGCGGGATCTGAT
EST: GAAGTCCATTCACTTTCTCGCATTCTGTCCAGAAAG GAACGTGATAATGAAGAAGCATCATGCAGATCTGCCCGTGCGGGATCTGAT
genomic: GAAGTCCATTCACTTTCTCGCATTCTGTCCAGAAAGgtaaattgct ... tgttttatagGAACGTGATAATGAAGAAGCATCATGCAGATCTGCCCGTGCGGGATCTGAT
caagtgttatggcattgattcgccaatgtgtcaggctgtttattttgttttatagGAACGTGATAATGAAGAAGCATCATGCAGATCTGCCCGTGCGGGATCTGATATAACACAACTTCAATCAGTG
cattgat putative branch site (score: 31)
ttttgtttt putative PPT
tgtttattttgtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaattgcttgttattggcttgcacatatgactcgcaagtgttatggcattgattcgccaatgtgtcaggctgtttattttgttttatagGAACGTGATAATGAAGAAGCATCATGCAGATCTGCCCGTGCGGGATCTGATATAACACAACTTCAATCAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT